Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11n23
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    28   0.36 
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    26   1.1  
SPAC29B12.03 |spd1||ribonucleotide reductase |Schizosaccharomyce...    25   1.9  
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb...    25   3.3  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   3.3  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    24   4.4  
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    24   5.8  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   7.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    23   7.7  

>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 27.9 bits (59), Expect = 0.36
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 306 EVVNMNLDVPYYRLGNHEKVEYIPLKLALNDDITSEPQQFSEPVYK 169
           EV+    ++PY     H  +E   L L+L      EP+ F  P YK
Sbjct: 753 EVIEEFKEIPYLDPLEHMHIESSTLSLSLRKLEILEPKLFDSPYYK 798


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 285 DVPYYRLGNHEKVEYIPLKLALNDDITSEPQQFSEPV 175
           ++PY    NHE++  IPL+   N +I   P Q   P+
Sbjct: 390 NIPYSPNSNHEEINSIPLR---NKNIFVPPSQGHSPL 423


>SPAC29B12.03 |spd1||ribonucleotide reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 124

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 237 PLKLAL-NDDITSEPQQFSEPVYKMPIDDMMVGYN 136
           P + A+ N +  + PQ F EP +  P D +M G N
Sbjct: 87  PFEQAIPNYNWANPPQDFEEPEWLKPFDVVMEGTN 121


>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 264 GNHEKVEYIPLKLALNDDITSEP 196
           G    +E+ P K+ + DD+T EP
Sbjct: 138 GRSYHLEFNPPKVPMKDDVTGEP 160


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 287 WTCHTIGWATTKRWNTSR*NWRSTMISPANRNNLASPFTK 168
           WTC T  +AT ++ +T +    +   + A  NNL    T+
Sbjct: 303 WTCATCSFATQRKKSTFQKENANVDANHATENNLEGQATQ 342


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 190 LLRFAGDIIVERQFQRDVFHLFV 258
           L+RFAG I+ E Q Q     LFV
Sbjct: 787 LVRFAGGILTEDQLQPGKVALFV 809


>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 204 SEPQQFSEPVYKMPIDD 154
           +EP  FS P++K P D+
Sbjct: 207 AEPDMFSFPIFKKPDDE 223


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 243 YIPLKLALNDDITSEPQQFSEPVYKMPIDDMMVGYN 136
           Y PL  A+ D   + PQQ   P++    DD  + Y+
Sbjct: 577 YNPLP-AMADPAQNVPQQLPPPIHSHLSDDQHIQYS 611


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 88   SRFYSFIFTIVCNILFRNI 32
            S FY F   I+CNIL+RN+
Sbjct: 4074 SDFY-FGTKILCNILYRNV 4091


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,067,631
Number of Sequences: 5004
Number of extensions: 16689
Number of successful extensions: 50
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)