Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11n23
         (306 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin pro...    29   1.5  
AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC...    29   1.5  
AY069636-1|AAL39781.1|  317|Drosophila melanogaster LD40415p pro...    26   7.9  
AE014134-973|AAF52289.1|  317|Drosophila melanogaster CG14005-PA...    26   7.9  

>AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin protein.
          Length = 16215

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -1

Query: 285   DVPYYRLGNHEKVEYI--PLKLALNDDITSEPQ-QFSEPVYKMP 163
             ++P   L  +EKVE    P+KL ++D I  EP+   S+P+  +P
Sbjct: 12668 EIPKVDLEKYEKVEMPEKPVKLTVSDSIPEEPKPDKSQPISVLP 12711


>AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC,
             isoform C protein.
          Length = 18074

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -1

Query: 285   DVPYYRLGNHEKVEYI--PLKLALNDDITSEPQ-QFSEPVYKMP 163
             ++P   L  +EKVE    P+KL ++D I  EP+   S+P+  +P
Sbjct: 14527 EIPKVDLEKYEKVEMPEKPVKLTVSDSIPEEPKPDKSQPISVLP 14570


>AY069636-1|AAL39781.1|  317|Drosophila melanogaster LD40415p
           protein.
          Length = 317

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 133 HDEQRVGGNYNFN*CSRFYSFIFTIVC 53
           +D  RVGGN NF    R Y+ I  + C
Sbjct: 73  NDRNRVGGNANFAKDWRLYALIDCLFC 99


>AE014134-973|AAF52289.1|  317|Drosophila melanogaster CG14005-PA
           protein.
          Length = 317

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 133 HDEQRVGGNYNFN*CSRFYSFIFTIVC 53
           +D  RVGGN NF    R Y+ I  + C
Sbjct: 73  NDRNRVGGNANFAKDWRLYALIDCLFC 99


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,551,762
Number of Sequences: 53049
Number of extensions: 192270
Number of successful extensions: 559
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 568694034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)