Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11n16
(298 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021479-1|CAA16321.2| 346|Caenorhabditis elegans Hypothetical ... 32 0.064
Z83218-6|CAI58632.1| 273|Caenorhabditis elegans Hypothetical pr... 31 0.15
Z92829-14|CAB07342.2| 337|Caenorhabditis elegans Hypothetical p... 30 0.34
AC006675-10|AAK84551.2| 280|Caenorhabditis elegans Serpentine r... 29 0.60
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 28 1.4
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 28 1.4
AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical ... 27 2.4
AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical ... 27 2.4
Z79756-1|CAB02120.2| 494|Caenorhabditis elegans Hypothetical pr... 25 7.4
U09277-1|AAC13764.1| 532|Caenorhabditis elegans UNC-17 protein. 25 7.4
L19621-1|AAC14456.1| 532|Caenorhabditis elegans acetylcholine t... 25 7.4
AF101318-11|ABA00165.1| 67|Caenorhabditis elegans Hypothetical... 25 7.4
AF036701-4|AAB88371.1| 532|Caenorhabditis elegans Uncoordinated... 25 7.4
AF016670-6|AAB66103.2| 839|Caenorhabditis elegans Hypothetical ... 25 7.4
AC006675-3|AAK84550.1| 335|Caenorhabditis elegans Serpentine re... 25 7.4
Z83218-1|CAB05686.1| 282|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z81545-10|CAB04448.1| 170|Caenorhabditis elegans Hypothetical p... 25 9.7
Z68318-5|CAA92694.1| 418|Caenorhabditis elegans Hypothetical pr... 25 9.7
U41746-6|AAA83333.1| 388|Caenorhabditis elegans Mediator protei... 25 9.7
AL031627-25|CAA20971.1| 170|Caenorhabditis elegans Hypothetical... 25 9.7
AF036692-5|AAS47681.1| 319|Caenorhabditis elegans Serpentine re... 25 9.7
>AL021479-1|CAA16321.2| 346|Caenorhabditis elegans Hypothetical
protein Y22F5A.2 protein.
Length = 346
Score = 32.3 bits (70), Expect = 0.064
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = -1
Query: 283 LLGHTMGAYTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCAL--- 113
L+ + G DYRY + +IL + + F+I+M L + ++ F S +
Sbjct: 34 LICYHHGMIDDYRYYLLYFQIILLIFDIYFSILMVPIPLFPVIGGYTIGFLSNFFGISTH 93
Query: 112 YIMIATVWSLKNNLTSFYASNLQSIQVV 29
Y M+ T+W + N T + S L+ QVV
Sbjct: 94 YQMVFTLWCIGNTNTCIFISLLKRHQVV 121
>Z83218-6|CAI58632.1| 273|Caenorhabditis elegans Hypothetical
protein C31A11.10 protein.
Length = 273
Score = 31.1 bits (67), Expect = 0.15
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = -1
Query: 259 YTDYRY-AKSCYMVILFVSVMSFT--IVMGLECLKTKLVDSSLMFNSFMCALYIMIATVW 89
Y +YR +C++ + ++S I+ G+ C ++D+ L +SF+CA+ T W
Sbjct: 115 YYNYRQNLLNCFVWFFIICIVSIDQYILFGV-C--DVVIDTPLDCDSFLCAMNQCYTTYW 171
Query: 88 SLKNNLTSFYASNLQSIQVVPF 23
L +T+F SN+ VV F
Sbjct: 172 LLHERITTF--SNVFFSAVVTF 191
>Z92829-14|CAB07342.2| 337|Caenorhabditis elegans Hypothetical
protein F10A3.8 protein.
Length = 337
Score = 29.9 bits (64), Expect = 0.34
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = -1
Query: 235 SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLKNNLTSFYA 56
SCY +I+ + + F KLV S+ F L I+ A+VW L N+L +
Sbjct: 100 SCYAIIISLITIHFYYRYLSVMFPVKLVRFSVRNLPFWILLVILNASVWFLLNSLVN-GP 158
Query: 55 SNLQSIQVVP 26
S +Q ++P
Sbjct: 159 SEIQDAILIP 168
>AC006675-10|AAK84551.2| 280|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 57 protein.
Length = 280
Score = 29.1 bits (62), Expect = 0.60
Identities = 18/77 (23%), Positives = 32/77 (41%)
Frame = -1
Query: 259 YTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLK 80
Y +R S Y+V+ F+S+ F L ++D + +F C + W +
Sbjct: 116 YHKHRNKISMYLVLFFISLFVFFDQFMLFGYCGNVIDVPVNCENFQCTVNQCYLQYWMVH 175
Query: 79 NNLTSFYASNLQSIQVV 29
+ F S+L +I V
Sbjct: 176 EQVVFFVISSLSTILFV 192
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
R07G3.3a protein.
Length = 1982
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 69 VKLFFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSK 179
+KL F D T I YK I LN+K+L + K K
Sbjct: 1361 LKLQFDDFTAKINDYKTEIENLNMKVLRMGILEKSLK 1397
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
R07G3.3b protein.
Length = 1987
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 69 VKLFFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSK 179
+KL F D T I YK I LN+K+L + K K
Sbjct: 1361 LKLQFDDFTAKINDYKTEIENLNMKVLRMGILEKSLK 1397
>AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical
protein Y113G7A.3 protein.
Length = 821
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +3
Query: 87 DHTVAIIMY--KAHINELNIKLLSTSFVFKHSKPIT 188
D V +I Y ++ELN + +S S+VFK +K +T
Sbjct: 165 DALVGLITYGRMVQLHELNTQGISRSYVFKGTKEVT 200
>AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical
protein F13C5.1 protein.
Length = 437
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 94 VWSLKNNLTSFYASNLQSIQVVPFSYNDP 8
VWSL +FY+ L S+ +PFS P
Sbjct: 16 VWSLAVLCLAFYSRRLSSLASLPFSKTTP 44
>Z79756-1|CAB02120.2| 494|Caenorhabditis elegans Hypothetical
protein F53C11.1 protein.
Length = 494
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 112 YIMIATVWSLKNNLTSFYASNLQSIQVVPFSYNDP 8
YI+ ++W+ T Y++N S + V F+ N P
Sbjct: 356 YIISPSIWNPTTLKTPSYSTNFTSSETVRFNINLP 390
>U09277-1|AAC13764.1| 532|Caenorhabditis elegans UNC-17 protein.
Length = 532
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -1
Query: 235 SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLM 137
+C+ + SVM I + C L+D+SL+
Sbjct: 349 ACFAIPYTTSVMQLVIPLSFVCFGIALIDTSLL 381
>L19621-1|AAC14456.1| 532|Caenorhabditis elegans acetylcholine
transporter protein.
Length = 532
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -1
Query: 235 SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLM 137
+C+ + SVM I + C L+D+SL+
Sbjct: 349 ACFAIPYTTSVMQLVIPLSFVCFGIALIDTSLL 381
>AF101318-11|ABA00165.1| 67|Caenorhabditis elegans Hypothetical
protein Y73C8C.12 protein.
Length = 67
Score = 25.4 bits (53), Expect = 7.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2
Query: 86 RPHCCNHNVQS 118
RPHCC +++QS
Sbjct: 47 RPHCCRYSIQS 57
>AF036701-4|AAB88371.1| 532|Caenorhabditis elegans Uncoordinated
protein 17, isoform a protein.
Length = 532
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -1
Query: 235 SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLM 137
+C+ + SVM I + C L+D+SL+
Sbjct: 349 ACFAIPYTTSVMQLVIPLSFVCFGIALIDTSLL 381
>AF016670-6|AAB66103.2| 839|Caenorhabditis elegans Hypothetical
protein K02F6.3 protein.
Length = 839
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -1
Query: 190 IVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLKNNLTSFYASNLQSIQVVPFS 20
++ LECLK K DSSL + I V + + T + + +Q + FS
Sbjct: 534 LITTLECLKDKKFDSSLASDLMKFGSNIRAFGVHAKNDKATISFLDQISKLQNLYFS 590
>AC006675-3|AAK84550.1| 335|Caenorhabditis elegans Serpentine
receptor, class h protein35 protein.
Length = 335
Score = 25.4 bits (53), Expect = 7.4
Identities = 7/23 (30%), Positives = 18/23 (78%)
Frame = -2
Query: 69 LVFTLQIYKVFKLFRFHTTIRRH 1
++FT +++K+F ++R H + +R+
Sbjct: 113 ILFTSRLFKIFNMYRSHCSWQRY 135
>Z83218-1|CAB05686.1| 282|Caenorhabditis elegans Hypothetical
protein C31A11.4 protein.
Length = 282
Score = 25.0 bits (52), Expect = 9.7
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = -1
Query: 259 YTDYRYAKS-CYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSL 83
Y +YR S C + L + ++ F M L ++D+ L +F+C + AT W
Sbjct: 115 YHNYRQKLSNCIVWFLIILLILFDQYM-LFGFCDVVIDTPLDCYNFLCTMNQCYATYWLS 173
Query: 82 KNNLTSFYASNLQSIQVVPF 23
+ SF SN+ VV F
Sbjct: 174 HERIFSF--SNVFFSAVVSF 191
>Z81545-10|CAB04448.1| 170|Caenorhabditis elegans Hypothetical
protein F49H6.13 protein.
Length = 170
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 148 SSLMFNSFMCALYIMIATVWSLKNNLTSFYASNLQ 44
SSLM+ SF+C++ + I + + NN+ S+LQ
Sbjct: 54 SSLMYVSFLCSVLVFIQLIIT-SNNVRKNGYSHLQ 87
>Z68318-5|CAA92694.1| 418|Caenorhabditis elegans Hypothetical
protein T21B10.4 protein.
Length = 418
Score = 25.0 bits (52), Expect = 9.7
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 286 ILLGHTMGA-YTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSF 125
++LG T GA +T YR + M L+ S++ + G +C KL+ S M N +
Sbjct: 249 VILGATGGAFFTSYR-KREGNMTKLYTSLVPANLSAGFKC--EKLIKPSSMPNFY 300
>U41746-6|AAA83333.1| 388|Caenorhabditis elegans Mediator protein
27 protein.
Length = 388
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -3
Query: 242 CQIMLYGYIVCFSYEFYYC 186
C + Y+ CFS + YYC
Sbjct: 338 CNNYIQSYVNCFSTKCYYC 356
>AL031627-25|CAA20971.1| 170|Caenorhabditis elegans Hypothetical
protein F49H6.13 protein.
Length = 170
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 148 SSLMFNSFMCALYIMIATVWSLKNNLTSFYASNLQ 44
SSLM+ SF+C++ + I + + NN+ S+LQ
Sbjct: 54 SSLMYVSFLCSVLVFIQLIIT-SNNVRKNGYSHLQ 87
>AF036692-5|AAS47681.1| 319|Caenorhabditis elegans Serpentine
receptor, class x protein13 protein.
Length = 319
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/32 (25%), Positives = 19/32 (59%)
Frame = -1
Query: 277 GHTMGAYTDYRYAKSCYMVILFVSVMSFTIVM 182
GH + YTDY + + ++ + V +M+ +++
Sbjct: 186 GHVISTYTDYYTSVAIFIAMSSVDIMTLILLI 217
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,174,270
Number of Sequences: 27780
Number of extensions: 99689
Number of successful extensions: 307
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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