Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11n09
(453 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 163 6e-41
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 162 1e-40
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 161 2e-40
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 51 5e-07
07_01_0344 - 2490700-2493249 30 0.76
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 30 0.76
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348... 29 2.3
03_03_0162 - 14964106-14964644,14964810-14965020 27 7.1
12_01_0936 - 9285923-9286086,9286343-9286546,9287987-9288143 27 9.3
05_05_0026 + 21645845-21647404 27 9.3
03_06_0677 + 35476009-35476014,35476974-35477474,35477574-354777... 27 9.3
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 27 9.3
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 163 bits (396), Expect = 6e-41
Identities = 75/116 (64%), Positives = 94/116 (81%)
Frame = -2
Query: 350 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 171
A + G + +A ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKGPVR+P
Sbjct: 9 AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIP 68
Query: 170 TKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 3
TK+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++VKQITSI IEPGVEVE
Sbjct: 69 TKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVE 124
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 162 bits (394), Expect = 1e-40
Identities = 79/121 (65%), Positives = 97/121 (80%), Gaps = 4/121 (3%)
Frame = -2
Query: 353 MAAAVV----SGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKG 186
MAAA V G + +A ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKG
Sbjct: 1 MAAAAVYGGMKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKG 60
Query: 185 PVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEV 6
PVR+PTK+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++VKQITSI IEPGVEV
Sbjct: 61 PVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEV 120
Query: 5 E 3
E
Sbjct: 121 E 121
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 161 bits (392), Expect = 2e-40
Identities = 77/116 (66%), Positives = 95/116 (81%)
Frame = -2
Query: 350 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 171
A + SGK + EV HRIRITL+S++V++LEKVC DL+ GAK + L+VKGPVRMP
Sbjct: 9 APPMKSGKIGFESSQEVQ--HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMP 66
Query: 170 TKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 3
TK+L ITTRK+PCGEG+ TWDRF+MR+HKRVIDL S +++VKQITSI IEPGVEVE
Sbjct: 67 TKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVE 122
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 50.8 bits (116), Expect = 5e-07
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Frame = -2
Query: 302 VSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEG 123
++P +IRI L S V +E C +I AK + GPV +PTK +P
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHVHK 388
Query: 122 SKTWDRFQMRIHKRVIDLHSP-SEIVKQITSINIEPGVEVE 3
+ F++R H+R+ID+ P ++ + + + + GV+VE
Sbjct: 389 DSRF-HFEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVE 428
>07_01_0344 - 2490700-2493249
Length = 849
Score = 30.3 bits (65), Expect = 0.76
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 286 RWIGETSAWGFSMSLPDTTAAA 351
RWIG++S F++SLP T A A
Sbjct: 46 RWIGDSSPKNFTLSLPGTVATA 67
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 30.3 bits (65), Expect = 0.76
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 258 CALAREGLC*PNQWSQETEAACKGPSP 178
C LA EGL ++W++ A +GPSP
Sbjct: 155 CRLAAEGLVTASKWARPGRAGTRGPSP 181
>06_02_0345 +
14833838-14833997,14834095-14834552,14834633-14834870,
14834974-14835431,14836554-14836955
Length = 571
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = -1
Query: 285 HQDHSYFTQCALAREGLC*PNQWSQETEAACKG--PSPH---ANQDPA 157
H S +CAL R+G +W ET C G P+P +QDPA
Sbjct: 11 HHLQSTLFECALLRDGRAESFEWLFETFKNCMGNCPTPRCILTDQDPA 58
>03_03_0162 - 14964106-14964644,14964810-14965020
Length = 249
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 329 CLTLQRLPCCLLNSGRDKQLFNQKLFSAEPEKPHVSVTFER 451
C L+R+ C +K F+Q L E+PH +++F R
Sbjct: 31 CNRLKRIFACGCAGRTEKLRFSQTLSRFRLEQPHATISFVR 71
>12_01_0936 - 9285923-9286086,9286343-9286546,9287987-9288143
Length = 174
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 421 LRFSAEQFLIEKLFISAGIQQATWQPL*CQAKTLRNPRQR 302
+R + E I ++SA A + P CQ KTL P++R
Sbjct: 3 IRRAIENANIPHTYVSANCFAAYFSPNLCQMKTLLPPKER 42
>05_05_0026 + 21645845-21647404
Length = 519
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 205 CFLAPLIRSAQTFSSERTL 261
C L PL+RSA ++ SER L
Sbjct: 171 CRLIPLLRSASSYGSERLL 189
>03_06_0677 +
35476009-35476014,35476974-35477474,35477574-35477762,
35477925-35477945
Length = 238
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 228 PNQWSQETEAACKGPSPHANQDPAYHHP 145
PN +TEA K HA DPA P
Sbjct: 41 PNNHHGDTEALSKASPLHAGSDPAMRKP 68
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 26.6 bits (56), Expect = 9.3
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = -2
Query: 404 TIFD*KVVYLGRNSTSNMAAAVVSGKDIEK-PQAEVSPIHRIRITLTSRNVRSLEKVCAD 228
+I + K V L + N+ SG +I+ + V+ IHR R+TL +++ S
Sbjct: 215 SILEAKDVLLHAERSWNITLPGFSGDEIKLYKKPHVNDIHRERLTLIKKSMASESNAKGS 274
Query: 227 LINGAKKQKLRVKGP 183
A QK + P
Sbjct: 275 AAQAAANQKNQTPKP 289
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,965,684
Number of Sequences: 37544
Number of extensions: 287530
Number of successful extensions: 685
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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