Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11n04
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    28   1.5  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    27   4.5  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   5.9  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    26   5.9  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   7.8  

>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 174 LSYLFFYNVSFKIRVSKTLTRLNKIMVFQNETFSFCFVHIVNL 46
           LS++  YNV+F +     L RLN       +  +F   HI  L
Sbjct: 318 LSFMTDYNVNFSVSTLNQLLRLNLYHAMDEKISTFSSEHITKL 360


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 312 HEWLYVVASHIVPFNAIIIE 371
           + WLY +    V FN I++E
Sbjct: 633 YRWLYTITKSFVDFNGIVVE 652


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
 Frame = -3

Query: 412  LKVTTSPVWRYLTTSIMMALNGTMWLATT*SHSCAKTVMNY-LILS---DHGTRDCVSKL 245
            LK T+SP+W  + TS +   + +     +   S  KT +   L+LS   D+ TRD   +L
Sbjct: 1346 LKDTSSPLWNLVKTSRLFQSSNSPLNVASLQESNNKTSLGVKLLLSMDFDNLTRD---RL 1402

Query: 244  LTLRVVL 224
            L+L+++L
Sbjct: 1403 LSLQILL 1409


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 520 SGQVREPRSGPPPNVTRAIGLTP 452
           SG ++E  S  PPN+TRA    P
Sbjct: 110 SGALKEVSSNTPPNMTRAASQPP 132


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
 Frame = -2

Query: 638 FVKQRIA-----RGNIRYIWTSGRKCNFA 567
           ++KQR++      G IR IW  G+KC+ A
Sbjct: 147 YLKQRVSFIGDVPGEIRCIWRKGKKCHSA 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,644,993
Number of Sequences: 5004
Number of extensions: 77908
Number of successful extensions: 193
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)