Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11n04
(852 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ... 33 0.34
U42843-4|AAA83595.1| 178|Caenorhabditis elegans Hypothetical pr... 30 1.8
AL023821-1|CAA19438.2| 355|Caenorhabditis elegans Hypothetical ... 30 1.8
U00052-1|AAK95880.2| 308|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF099919-5|AAC68804.1| 188|Caenorhabditis elegans Hypothetical ... 29 3.2
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 29 4.2
L23646-14|AAN84801.2| 517|Caenorhabditis elegans C. elegans RET... 29 4.2
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 29 4.2
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 29 4.2
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 29 4.2
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 29 4.2
U13644-8|AAB52679.1| 471|Caenorhabditis elegans Hypothetical pr... 29 5.5
U41276-2|AAA82471.1| 82|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical p... 28 9.7
>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
protein Y46B2A.3 protein.
Length = 1145
Score = 32.7 bits (71), Expect = 0.34
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Frame = -2
Query: 596 WTSGRKCNFAGCDRGDLQPPNVNGWFWSGSGAKI----GPTTQRNTGDWSYTGGYGQAQP 429
WT+G RG Q P GW +G I GPT + T W+ G G
Sbjct: 307 WTNGANGTTIDTSRGFTQRPTTAGWTNGANGTTIDTSRGPTHRPTTAGWT-NGANGTTID 365
Query: 428 DNREAAQ 408
+RE Q
Sbjct: 366 TSREFTQ 372
Score = 31.9 bits (69), Expect = 0.60
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Frame = -2
Query: 596 WTSGRKCNFAGCDRGDLQPPNVNGWFWSGSGAKIGPT---TQR-NTGDWSYTGGYGQAQP 429
WT+G +G RG Q P + GW +G G + TQR T W+ G G
Sbjct: 649 WTNGANGTTSGTSRGFTQRPTIAGWTNGANGTTSGTSRGFTQRPTTAGWT-NGANGTTSG 707
Query: 428 DNREAAQ 408
+R Q
Sbjct: 708 TSRGFTQ 714
Score = 31.5 bits (68), Expect = 0.79
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = -2
Query: 596 WTSGRKCNFAGCDRGDLQPPNVNGWFWSGSGAKI----GPTTQRNTGDWSYTGGYGQAQP 429
WT+G +G RG Q P + GW +G I G T + T W+ G G
Sbjct: 475 WTNGANGTTSGTSRGFTQRPTIAGWTNGANGTTIDTSRGFTQRPTTAGWT-NGANGTTSG 533
Query: 428 DNREAAQ 408
+R Q
Sbjct: 534 TSRGFTQ 540
Score = 31.5 bits (68), Expect = 0.79
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = -2
Query: 596 WTSGRKCNFAGCDRGDLQPPNVNGWFWSGSGAKI----GPTTQRNTGDWSYTGGYGQAQP 429
WT+G +G RG Q P + GW +G I G T + T W+ G G
Sbjct: 601 WTNGANGTTSGTSRGFTQRPTIAGWTNGANGTTIDTSRGFTQRPTTAGWT-NGANGTTSG 659
Query: 428 DNREAAQ 408
+R Q
Sbjct: 660 TSRGFTQ 666
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = -2
Query: 596 WTSGRKCNFAGCDRGDLQPPNVNGWFWSGSGAKIGPT---TQRNT 471
WT+G +G RG Q P + GW +G G + TQR T
Sbjct: 799 WTNGANGTTSGTSRGFTQRPTIAGWTNGANGTTSGTSRGFTQRPT 843
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 596 WTSGRKCNFAGCDRGDLQPPNVNGWFWSGSGAKIGPT 486
WT+G +G RG Q P + GW +G G T
Sbjct: 523 WTNGANGTTSGTSRGFTQRPTIAGWTNGANGITRGQT 559
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 596 WTSGRKCNFAGCDRGDLQPPNVNGWFWSGSGAKIGPT 486
WT+G +G RG Q P + GW +G G T
Sbjct: 721 WTNGANGTTSGTSRGFTQRPTIAGWTNGANGITRGQT 757
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = -2
Query: 596 WTSGRKCNFAGCDRGDLQPPNVNGWFWSGSGAKIGPT---TQRNT 471
WT+G +G RG Q P GW +G G + TQR T
Sbjct: 697 WTNGANGTTSGTSRGFTQRPTTAGWTNGANGTTSGTSRGFTQRPT 741
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 596 WTSGRKCNFAGCDRGDLQPPNVNGWFWSGSGAKIGPT 486
WT+G +G RG Q P GW +G G T
Sbjct: 823 WTNGANGTTSGTSRGFTQRPTAAGWTIRANGITRGQT 859
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Frame = -2
Query: 596 WTSGRKCNFAGCDRGDLQPPNVNGWFWSGSGAKIGPT---TQRNTGDWSYTGGYGQAQPD 426
WT+G +G RG Q P GW +G G + QR T G G
Sbjct: 901 WTNGANGTTSGTSRGFTQRPTAAGWTNGANGTTSGTSRGFAQRPTAAGWTNGANGTTSGT 960
Query: 425 NR 420
+R
Sbjct: 961 SR 962
>U42843-4|AAA83595.1| 178|Caenorhabditis elegans Hypothetical
protein T19E7.1 protein.
Length = 178
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -2
Query: 722 EVDWLDARNICRRHCMDAVSLETPQENEFVKQRIARGNIRYIWTSGRKCN 573
+V W+ A N+CR VS++ EN FV + + N IW K N
Sbjct: 68 DVMWIPAENVCRSMGGHLVSIKDESENLFVHKLRKKNN---IWIGLNKLN 114
>AL023821-1|CAA19438.2| 355|Caenorhabditis elegans Hypothetical
protein Y102A5B.2 protein.
Length = 355
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 707 DARNICRRHCMDAVSLETPQENEFVK 630
DA+ IC+ C + VS+ + EN F++
Sbjct: 252 DAQEICKTRCANLVSISSANENRFIR 277
>U00052-1|AAK95880.2| 308|Caenorhabditis elegans Hypothetical
protein K02F3.5 protein.
Length = 308
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = -2
Query: 446 YGQAQPDNREAAQGNDESCLAILNNFYNDGIKWHDVACHHVKPFVCE 306
+G+ QPDN+E ++E+C+ + + +W D C +PFVC+
Sbjct: 268 WGKKQPDNQE----HNENCVEV-----DHSGQWTDKLCIITRPFVCK 305
>AF099919-5|AAC68804.1| 188|Caenorhabditis elegans Hypothetical
protein F40G9.10 protein.
Length = 188
Score = 29.5 bits (63), Expect = 3.2
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Frame = -2
Query: 707 DARNICRRHCMDAVSLETPQENEFVKQRIARGN-----IRYI------------WTSGRK 579
DA N CR + S+ + EN+F+ Q A GN Y+ WT G
Sbjct: 73 DAHNACRSEGSELASIHSLTENQFLVQLSAAGNRVNSKTNYVMIGLIFENREWSWTDGSS 132
Query: 578 CNFAGCDRGDLQPPNVNGWFWSGSGAKIGPTTQRNTGDWS 459
N+ G +P N+ W+ + + P + W+
Sbjct: 133 VNYLNWAAG--EPNNMKHELWTALVSDVNPKKGQMYTHWN 170
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Frame = -2
Query: 464 WSYTGGYGQAQPDNREAAQGNDESCLAILNN-----FYNDGIKWHDVACHHVKPFVCEDS 300
W+Y G NR + +E+C ILN DG++ D+ FVC D
Sbjct: 2028 WTYVAELGWENSYNRYVDKLLNENCGDILNGPGTMLILADGLRLEDLPVSTKNCFVCTDY 2087
Query: 299 DE 294
DE
Sbjct: 2088 DE 2089
>L23646-14|AAN84801.2| 517|Caenorhabditis elegans C. elegans RETR-1
protein, isoformc protein.
Length = 517
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Frame = -2
Query: 464 WSYTGGYGQAQPDNREAAQGNDESCLAILNN-----FYNDGIKWHDVACHHVKPFVCEDS 300
W+Y G NR + +E+C ILN DG++ D+ FVC D
Sbjct: 273 WTYVAELGWENSYNRYVDKLLNENCGDILNGPGTMLILADGLRLEDLPVSTKNCFVCTDY 332
Query: 299 DE 294
DE
Sbjct: 333 DE 334
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Frame = -2
Query: 464 WSYTGGYGQAQPDNREAAQGNDESCLAILNN-----FYNDGIKWHDVACHHVKPFVCEDS 300
W+Y G NR + +E+C ILN DG++ D+ FVC D
Sbjct: 1931 WTYVAELGWENSYNRYVDKLLNENCGDILNGPGTMLILADGLRLEDLPVSTKNCFVCTDY 1990
Query: 299 DE 294
DE
Sbjct: 1991 DE 1992
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Frame = -2
Query: 464 WSYTGGYGQAQPDNREAAQGNDESCLAILNN-----FYNDGIKWHDVACHHVKPFVCEDS 300
W+Y G NR + +E+C ILN DG++ D+ FVC D
Sbjct: 1942 WTYVAELGWENSYNRYVDKLLNENCGDILNGPGTMLILADGLRLEDLPVSTKNCFVCTDY 2001
Query: 299 DE 294
DE
Sbjct: 2002 DE 2003
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 29.1 bits (62), Expect = 4.2
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = -2
Query: 635 VKQRIARGNIRYIWTSGRKCNFAGCDRGDLQPPNVNGWF--WSGSGAKIGPTTQRNTGDW 462
VK+ + +G R+ GR G G N +GW+ W GA T GDW
Sbjct: 182 VKKAVPQGK-RFPGAQGRMPGGRGM-YGGRGGNNNSGWYAGWGQIGAMPYGATGAAWGDW 239
Query: 461 SYTGGYGQ---AQPDNREAAQG 405
G YGQ A +N ++QG
Sbjct: 240 YGNGYYGQQGAAHHNNSGSSQG 261
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 29.1 bits (62), Expect = 4.2
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = -2
Query: 635 VKQRIARGNIRYIWTSGRKCNFAGCDRGDLQPPNVNGWF--WSGSGAKIGPTTQRNTGDW 462
VK+ + +G R+ GR G G N +GW+ W GA T GDW
Sbjct: 182 VKKAVPQGK-RFPGAQGRMPGGRGM-YGGRGGNNNSGWYAGWGQIGAMPYGATGAAWGDW 239
Query: 461 SYTGGYGQ---AQPDNREAAQG 405
G YGQ A +N ++QG
Sbjct: 240 YGNGYYGQQGAAHHNNSGSSQG 261
>U13644-8|AAB52679.1| 471|Caenorhabditis elegans Hypothetical
protein F56D2.1 protein.
Length = 471
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = -2
Query: 785 DARGVLHSYFFSWEHAPTRSLEVDWLDARNICRRHCMDAVSLETPQENEFVKQRIARGNI 606
D G++ S W+H + + E + A+N R + + T + K+ + GN+
Sbjct: 355 DTSGIMKSVAHEWKHLASAATEEEVAMAKNQFRTNLYQNLETNTQKAGFNAKELLYTGNL 414
Query: 605 RYI 597
R +
Sbjct: 415 RQL 417
>U41276-2|AAA82471.1| 82|Caenorhabditis elegans Hypothetical
protein C52B11.4 protein.
Length = 82
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Frame = -2
Query: 635 VKQRIARGNIRYIWTSGRK-----CNFAGCDRGDLQPPNVNG 525
V Q++ N+R+IW +GRK N C PPN G
Sbjct: 30 VDQKLNNRNLRFIWLNGRKGKERAANCHCCKTTQASPPNHAG 71
>Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical
protein Y69H2.11 protein.
Length = 887
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 446 YGQAQPDNREAAQGNDESCLAILNNFYNDGIKWHDVAC 333
Y QA P N + Q ++ SC+ + + D KW D C
Sbjct: 745 YPQA-PGNVTSCQLSERSCVTVASEAAGDPSKWWDCVC 781
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,534,877
Number of Sequences: 27780
Number of extensions: 462524
Number of successful extensions: 1421
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -