Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11n04
         (852 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          29   0.054
AB264336-1|BAF44091.1|   21|Apis mellifera ecdysone-induced prot...    25   0.88 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.5  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   3.6  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   3.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   8.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   8.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   8.2  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 29.1 bits (62), Expect = 0.054
 Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
 Frame = -2

Query: 755 FSWEHAPTRSLEVDWLDARNICRRHCMDAVSLETPQENEFVKQRIARGNIRYIWTSGRKC 576
           ++WEH  T    +DW      C      AV LET Q N      I  GN     T+    
Sbjct: 188 YNWEHKETH---IDWQPEDEECTEATAGAVVLETCQRNS-NNSTITAGNAN---TNASNN 240

Query: 575 NFAGCDRGDLQPPNVNGWFWSGSGAKIGPTTQRNTGD-WSYTG-GYGQAQPDNRE 417
           N    +  +    N NG   +G+G   G +   N GD + +TG G+    PD  E
Sbjct: 241 N----NNNNNNNNNNNGANDNGNGN--GASNNNNNGDMFCHTGLGHYGHHPDPGE 289


>AB264336-1|BAF44091.1|   21|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 21

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 773 LPVHRGMSNGVLGWHNS 823
           LP+ +G+ NGV+ +HN+
Sbjct: 5   LPILKGILNGVVNYHNA 21


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 239 GEKLRDAVPGSVIGQN*VVHHCLRT 313
           G+ L    PG V+G+  ++++C RT
Sbjct: 153 GKYLSTLAPGKVLGELAILYNCKRT 177


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 691 QMFLASSQSTSKLRV 735
           +MFL S Q TSKL++
Sbjct: 79  RMFLISQQKTSKLKI 93


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 691 QMFLASSQSTSKLRV 735
           +MFL S Q TSKL++
Sbjct: 62  RMFLISQQKTSKLKI 76


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 520 SGQVREPRSGPPPNVTRAIGLTPVATV 440
           SG+   P  G PP+ TR   L  VATV
Sbjct: 438 SGEYEIPAHGLPPSATR-YDLGAVATV 463


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 484 PNVTRAIGLTPVATVKRSLITEKLLKVTTSPVWRY 380
           P V  A      A    SL+   L+ V ++PVWR+
Sbjct: 521 PKVESAFHNAEEAFSPLSLLGGPLVMVCSAPVWRF 555


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 467 RPCYVGWWARSWLPNLTRTNRSHLEAV 547
           +PC   W AR W   +T    +++EAV
Sbjct: 299 KPCT--WAARPWQGYMTNNGVNNVEAV 323


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 467 RPCYVGWWARSWLPNLTRTNRSHLEAV 547
           +PC   W AR W   +T    +++EAV
Sbjct: 299 KPCT--WAARPWQGYMTNNGVNNVEAV 323


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 467 RPCYVGWWARSWLPNLTRTNRSHLEAV 547
           +PC   W AR W   +T    +++EAV
Sbjct: 299 KPCT--WAARPWQGYMTNNGVNNVEAV 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,565
Number of Sequences: 438
Number of extensions: 6155
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)