Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11m23
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    29   0.65 
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    28   2.0  
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    27   3.5  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    26   8.0  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    26   8.0  

>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 13/127 (10%)
 Frame = +3

Query: 132 VIDLKKFTFLSLKYLITIFGDLGILLSDR*L*MSKTNLFSIKRFFKL*STIALCEF*TKS 311
           VID+     +S  Y + ++ D  +LL      ++  +L  I   F L    A C F   S
Sbjct: 203 VIDVVPADCISSNYALYVYSDAVVLLESHEKFIASYSLAEITSVFVLADGTA-CIFTLSS 261

Query: 312 E---RSSRTVEPSLIMISK*----PSKSASRIECAT*SLLPYDHK------TKTQPISCN 452
               +  ++ EP   +ISK     P KS + ++    SL  Y  K      T+    SCN
Sbjct: 262 STLLKLHQSPEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTEGTVDSCN 321

Query: 453 SCKLSYT 473
            CKLS T
Sbjct: 322 LCKLSNT 328


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = -1

Query: 728 ARRQHVRHQAQY*TRIQNASVGPHVCA*QQTANVF-VS*RMVSVATLQSGLSQKRIFDVG 552
           ARRQ  R QA++  R  + S+G +  + Q ++N+F  S R   +       ++K ++D  
Sbjct: 173 ARRQATRLQAKHLRRATSGSLGYNPYSLQNSSNIFSTSSRKGDLPKFSDYSAEKPMYDTI 232

Query: 551 ISARGRVRFGQHSHNRRGANSNSR 480
               G  R G  S  +   +++SR
Sbjct: 233 SEDDGLKRGGSVSKLKPTFSNDSR 256


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 19/77 (24%), Positives = 33/77 (42%)
 Frame = -2

Query: 406 RDHVAHSMRDADLEGYFDIIISEGSTVREERSDLVQNSHNAIVDYNLKKRFIENKFVFDI 227
           R  +   M +  LEG   + + +G++   E+   VQ SH  +V       +   K    +
Sbjct: 75  RQRLQQLMIEKSLEGDNPLDVDQGASENIEKETYVQGSHELLVARKKIALYSLEKAKLRL 134

Query: 226 HNHRSDNNIPKSPKIVI 176
              R  + IP  P+IV+
Sbjct: 135 KKEREISEIP-VPEIVL 150


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = -2

Query: 238 VFDIHNHRSDNNIPKSPKIVIKYLSDKNVNFFKSITLVDDLPTNNYAYDFYVKVKRCPTP 59
           +F  H+    +N   SP +V+  + +       S+  +DD      AYD+  +     T 
Sbjct: 495 MFVYHSSWVTSNAYSSPTVVLSTVLNDG-----SLMYIDDF---REAYDWLRRNTPYDTK 546

Query: 58  VRDWHNYHEQIIDQLDRV 5
           V  W +Y  QI    DR+
Sbjct: 547 VMSWWDYGYQIAGMADRI 564


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 533 HDHVRKSPRQRFAFERDHFVVWQQKPFFKK 622
           H HVR+ P      E D F  W  + +++K
Sbjct: 267 HIHVRRFPISEIPTEEDQFTDWLYQRWYEK 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,773,038
Number of Sequences: 5004
Number of extensions: 85122
Number of successful extensions: 252
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)