Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11m23
         (866 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   2.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   2.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   4.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   8.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   8.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.4  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   8.4  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 244 KFVFDIHNHRSDNNIPKSPKIVIKYLSDKNVNFFKSITLVDDL 116
           + V D   +R+DNNI +   I +     KN    ++I L D L
Sbjct: 251 RVVTDTIKYRNDNNIVRPDFINMLMELQKNPQKLENIKLTDSL 293


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 561 KDSLLRETTL*CGNRNHSLRN 623
           K SLL+E T+ C    H L+N
Sbjct: 379 KQSLLKENTVTCQEAMHMLKN 399


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
 Frame = -2

Query: 235 FDIHNHRSDNNIPKSPKIVIKYLSDKNVNFFKSITLVDDLPTNNYAYDFYVKVKRCPTPV 56
           F +H    +N IP+  K  I+ L      FF  + +        Y YD  + V      V
Sbjct: 36  FSVHQVYPENLIPRLAKKAIQVLGVTEKEFFDQMGVHFVGFVGQYGYDRVLSV--LGRHV 93

Query: 55  RDW----HNYHEQIIDQLDRVR 2
           RD+     N HE +     R+R
Sbjct: 94  RDFLNGLDNLHEYLKFSYPRMR 115


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +1

Query: 202 YCCRIDDCECQ 234
           +CC  D C+C+
Sbjct: 748 HCCDFDACDCE 758


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 531 NTTTCGNPHVKDSL 572
           NT  C NP+ +DSL
Sbjct: 106 NTKNCVNPYDRDSL 119


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 741 KYLKRPPTTCATSGTI 694
           K +  PP  CA SG+I
Sbjct: 309 KSITEPPKNCADSGSI 324


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 594  CGNRNHSLRNEYIG 635
            CGN +H   N+++G
Sbjct: 1598 CGNFDHDSTNDFVG 1611


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 364 LPNRRLASSVLHDLYCHTTTRLK 432
           L    LAS V ++++C TT   K
Sbjct: 149 LMGANLASEVANEMFCETTIGCK 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,962
Number of Sequences: 438
Number of extensions: 6014
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)