Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11m21
         (141 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like rec...    25   9.7  
AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosoph...    25   9.7  

>AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like
           receptor TOL-1 protein.
          Length = 1221

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 21  NQKVACSHHVAGHQFGSLNDERKDL 95
           ++  +CSH V GHQ    +  +KDL
Sbjct: 672 SETASCSHAVDGHQIQIQSLSKKDL 696


>AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll
           (drosophila) family protein 1 protein.
          Length = 1221

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 21  NQKVACSHHVAGHQFGSLNDERKDL 95
           ++  +CSH V GHQ    +  +KDL
Sbjct: 672 SETASCSHAVDGHQIQIQSLSKKDL 696


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,991,808
Number of Sequences: 27780
Number of extensions: 35217
Number of successful extensions: 60
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 12,740,198
effective HSP length: 27
effective length of database: 11,990,138
effective search space used: 227812622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)