Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11m21
         (141 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    19   4.1  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    19   4.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    19   4.1  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    19   4.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    19   5.4  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              18   9.5  

>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
          precursor protein.
          Length = 223

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 30 VACSHHVAGHQFGSLNDERKDL 95
          +AC+H   G       +ERK++
Sbjct: 14 IACTHSFPGAHDEDSKEERKNV 35


>AY939856-1|AAX33236.1|  223|Apis mellifera venom
          carbohydrate-rich protein precursor protein.
          Length = 223

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 30 VACSHHVAGHQFGSLNDERKDL 95
          +AC+H   G       +ERK++
Sbjct: 14 IACTHSFPGAHDEDSKEERKNV 35


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 48  VAGHQFGSLNDERKDLPPSG 107
           + G +FG +   +  LPP G
Sbjct: 639 IGGGEFGDVCRGKLKLPPDG 658


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2
          protein.
          Length = 223

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 30 VACSHHVAGHQFGSLNDERKDL 95
          +AC+H   G       +ERK++
Sbjct: 14 IACTHSFPGAHDEDSKEERKNV 35


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 141 GTVASVYRANITRSVEDLSFRR*DSQI 61
           GTV  +   NIT  +E+L     ++Q+
Sbjct: 27  GTVNDIVSRNITMVLENLLMNYENNQL 53


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +3

Query: 24  QKVACSHHVAGHQFGSLNDERK 89
           +++ C  +    QFG ++D+R+
Sbjct: 67  RQLKCYMYCLWEQFGLVDDKRE 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,894
Number of Sequences: 438
Number of extensions: 358
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 27
effective length of database: 134,517
effective search space used:  2555823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)