Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11m18
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc... 116 3e-27
SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce... 43 5e-05
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 38 0.002
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 33 0.043
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 30 0.40
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 30 0.40
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha... 29 0.53
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 29 0.70
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1... 29 0.92
SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac... 28 1.6
SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces pom... 26 4.9
SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.9
SPAC977.05c |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.9
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 26 6.5
>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 117
Score = 116 bits (280), Expect = 3e-27
Identities = 57/86 (66%), Positives = 68/86 (79%)
Frame = -1
Query: 669 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETXSI 490
MKLVRFLMKL++ETV+IELKNG++VHGTIT VD+ MNTHLKAVK+T+K RE + +ET SI
Sbjct: 1 MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSI 60
Query: 489 RGNNIRYYXXXXXXXXXXXLIDDTPK 412
RGNNIRYY LIDD+ K
Sbjct: 61 RGNNIRYYILPDSLPLDTLLIDDSTK 86
>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 97
Score = 42.7 bits (96), Expect = 5e-05
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Frame = -1
Query: 648 MKLSHET----VTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETXSIRGN 481
+KL HET VT+EL+NGS G + + MN ++ + VT ++ L+ IRG+
Sbjct: 5 IKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVYIRGS 64
Query: 480 NIRY 469
+IR+
Sbjct: 65 HIRF 68
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = -1
Query: 627 VTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREE-LQLETXSIRGNNIRY 469
+ +ELKNG +G + D MN L+ V T+ + ++ +L IRGNNI+Y
Sbjct: 15 ILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKY 68
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 33.1 bits (72), Expect = 0.043
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = -1
Query: 669 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKV--TLKNREELQLETX 496
M F L VT+ELKN + G + VD +N L+ + V K ++
Sbjct: 1 MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDL 60
Query: 495 SIRGNNIRY 469
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 29.9 bits (64), Expect = 0.40
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -1
Query: 648 MKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLK 526
++LSHE EL+ SV+ + VD+ N+H +++ V L+
Sbjct: 208 IRLSHEAHVAELETISVILYQLAKVDLFQNSHFESLLVMLR 248
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 29.9 bits (64), Expect = 0.40
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = -1
Query: 651 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETXSIRGNNI 475
L K V ++L V+G + G D+ +N L+ + E++++ + +IRGN++
Sbjct: 9 LKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSVAIRGNSV 67
>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 75
Score = 29.5 bits (63), Expect = 0.53
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = -1
Query: 654 FLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETXSIRGNNI 475
FL K+ + V I L +G G ++ +D MN L+ + + ++ IRGNN+
Sbjct: 8 FLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNV 67
Query: 474 RY 469
Y
Sbjct: 68 LY 69
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 29.1 bits (62), Expect = 0.70
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 190 TVFMLNTIIKLQ*LLANCY*KVLWSFSLNKMFSWTTFLHSDAG 62
T+F++N I + N + W FS+ + W TF++S+ G
Sbjct: 1224 TIFVINIFILMNQERLNLISLITWMFSIGVFWIW-TFIYSEVG 1265
>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 28.7 bits (61), Expect = 0.92
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 509 CSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIVTVSWLSFIKNL 658
C+ FF F F VF+A +PV+ TT F S V VS ++ I +
Sbjct: 426 CAVILFFMGLFAKFAAVFVAIPSPVLGGMTT--FLFSSVAVSGIAIISQI 473
>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
Smf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 78
Score = 27.9 bits (59), Expect = 1.6
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = -1
Query: 654 FLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETXSIRGNNI 475
FL L + V + LK G GT+ VD MN L + + + L IR NN+
Sbjct: 11 FLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEILIRCNNV 70
>SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +2
Query: 479 LFPRILXVSNCSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIVT 628
L PR+ ++ ++ F +TFT ++ T P + +PF N++ +
Sbjct: 78 LIPRLFTIAENDTANFTPLTFT----TYLKTCNPQSIENAMIPFVNTVTS 123
>SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +2
Query: 479 LFPRILXVSNCSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIVT 628
L PR+ ++ ++ F +TFT ++ T P + +PF N++ +
Sbjct: 78 LIPRLFTIAENDTANFTPLTFT----TYLKTCNPQSIENAMIPFVNTVTS 123
>SPAC977.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 204
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +2
Query: 479 LFPRILXVSNCSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIVT 628
L PR+ ++ ++ F +TFT ++ T P + +PF N++ +
Sbjct: 79 LIPRLFTIAENDTANFTPLTFT----TYLKTCNPQSIENAMIPFVNTVTS 124
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 118 SFSLNKMFSWTTFL 77
SFSL K + WTTFL
Sbjct: 148 SFSLRKRYLWTTFL 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,230
Number of Sequences: 5004
Number of extensions: 42335
Number of successful extensions: 95
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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