Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11m18
(741 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY071359-1|AAL48981.1| 124|Drosophila melanogaster RE39488p pro... 130 3e-30
AE014296-2169|AAF49893.1| 124|Drosophila melanogaster CG10753-P... 129 3e-30
AE014296-2128|AAF49929.1| 95|Drosophila melanogaster CG10418-P... 36 0.077
BT001620-1|AAN71375.1| 154|Drosophila melanogaster RE35747p pro... 34 0.18
AE014134-1871|AAF52938.3| 154|Drosophila melanogaster CG17768-P... 34 0.18
AY113465-1|AAM29470.1| 151|Drosophila melanogaster RE39820p pro... 34 0.23
AF038598-1|AAB92621.1| 151|Drosophila melanogaster small nuclea... 34 0.23
AE013599-1407|AAF58566.1| 151|Drosophila melanogaster CG8427-PA... 34 0.23
AY113474-1|AAM29479.1| 79|Drosophila melanogaster RE43665p pro... 32 0.94
AE013599-3092|AAF46645.1| 79|Drosophila melanogaster CG9344-PA... 32 0.94
>AY071359-1|AAL48981.1| 124|Drosophila melanogaster RE39488p
protein.
Length = 124
Score = 130 bits (313), Expect = 3e-30
Identities = 62/86 (72%), Positives = 71/86 (82%)
Frame = -1
Query: 669 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETXSI 490
MKLVRFLMKLSHETVTIELKNG+ +HGTITGVDVAMNTHLK+V++T+KNR+ + LET SI
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDHVHLETLSI 60
Query: 489 RGNNIRYYXXXXXXXXXXXLIDDTPK 412
RGNNIRY+ LIDDTPK
Sbjct: 61 RGNNIRYFILPDSLPLETLLIDDTPK 86
>AE014296-2169|AAF49893.1| 124|Drosophila melanogaster CG10753-PA
protein.
Length = 124
Score = 129 bits (312), Expect = 3e-30
Identities = 62/86 (72%), Positives = 71/86 (82%)
Frame = -1
Query: 669 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETXSI 490
MKLVRFLMKLSHETVTIELKNG+ +HGTITGVDVAMNTHLK+V++T+KNR+ + LET SI
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSI 60
Query: 489 RGNNIRYYXXXXXXXXXXXLIDDTPK 412
RGNNIRY+ LIDDTPK
Sbjct: 61 RGNNIRYFILPDSLPLETLLIDDTPK 86
>AE014296-2128|AAF49929.1| 95|Drosophila melanogaster CG10418-PA
protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.077
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -1
Query: 669 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNR--EELQLETX 496
M F L + V +ELKN + GT+ VD +N L + VT ++ L ++
Sbjct: 1 MLFYSFFKSLVGKEVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNC 60
Query: 495 SIRGNNIRY 469
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>BT001620-1|AAN71375.1| 154|Drosophila melanogaster RE35747p
protein.
Length = 154
Score = 34.3 bits (75), Expect = 0.18
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -1
Query: 621 IELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETXSIRGNNIRY 469
+ELKNG +G + D MN +L+ V T K+ + ++ IRG+ I+Y
Sbjct: 17 VELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKY 68
>AE014134-1871|AAF52938.3| 154|Drosophila melanogaster CG17768-PA,
isoform A protein.
Length = 154
Score = 34.3 bits (75), Expect = 0.18
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -1
Query: 621 IELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETXSIRGNNIRY 469
+ELKNG +G + D MN +L+ V T K+ + ++ IRG+ I+Y
Sbjct: 17 VELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKY 68
>AY113465-1|AAM29470.1| 151|Drosophila melanogaster RE39820p
protein.
Length = 151
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -1
Query: 660 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETXSIRGN 481
++ L + +T E G V G + + MN + + VT ++ LE IRG+
Sbjct: 7 IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGS 66
Query: 480 NIRY 469
IR+
Sbjct: 67 KIRF 70
>AF038598-1|AAB92621.1| 151|Drosophila melanogaster small nuclear
ribonucleoproteinSm D3 protein.
Length = 151
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -1
Query: 660 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETXSIRGN 481
++ L + +T E G V G + + MN + + VT ++ LE IRG+
Sbjct: 7 IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGS 66
Query: 480 NIRY 469
IR+
Sbjct: 67 KIRF 70
>AE013599-1407|AAF58566.1| 151|Drosophila melanogaster CG8427-PA
protein.
Length = 151
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -1
Query: 660 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETXSIRGN 481
++ L + +T E G V G + + MN + + VT ++ LE IRG+
Sbjct: 7 IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGS 66
Query: 480 NIRY 469
IR+
Sbjct: 67 KIRF 70
>AY113474-1|AAM29479.1| 79|Drosophila melanogaster RE43665p
protein.
Length = 79
Score = 31.9 bits (69), Expect = 0.94
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = -1
Query: 678 SSRMKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLET 499
S + L +F+ ++ V ++L NG G + +D MN L+ + + + + +
Sbjct: 2 SRKEALSQFINQIHGRPVAVKLNNGVDYRGVLACLDGYMNICLEQTEEYVNGQLKNKYGD 61
Query: 498 XSIRGNNIRY 469
IRGNN+ Y
Sbjct: 62 AFIRGNNVLY 71
>AE013599-3092|AAF46645.1| 79|Drosophila melanogaster CG9344-PA
protein.
Length = 79
Score = 31.9 bits (69), Expect = 0.94
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = -1
Query: 678 SSRMKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLET 499
S + L +F+ ++ V ++L NG G + +D MN L+ + + + + +
Sbjct: 2 SRKEALSQFINQIHGRPVAVKLNNGVDYRGVLACLDGYMNICLEQTEEYVNGQLKNKYGD 61
Query: 498 XSIRGNNIRY 469
IRGNN+ Y
Sbjct: 62 AFIRGNNVLY 71
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,415,714
Number of Sequences: 53049
Number of extensions: 430158
Number of successful extensions: 1175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3355404063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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