Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11m17
(484 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY118868-1|AAM50728.1| 156|Drosophila melanogaster GM26647p pro... 215 3e-56
AF216206-1|AAF65682.1| 156|Drosophila melanogaster ribosomal pr... 215 3e-56
AE014298-2436|AAN09413.1| 156|Drosophila melanogaster CG4464-PC... 215 3e-56
AE014298-2435|AAN09412.1| 156|Drosophila melanogaster CG4464-PB... 215 3e-56
AE014298-2434|AAF48633.1| 156|Drosophila melanogaster CG4464-PA... 215 3e-56
X73153-1|CAA51677.1| 156|Drosophila melanogaster ribosomal prot... 214 5e-56
AY119257-1|AAM51117.1| 155|Drosophila melanogaster SD22440p pro... 176 1e-44
AE014297-3411|AAN13960.1| 155|Drosophila melanogaster CG5338-PB... 176 1e-44
AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin pro... 28 5.8
AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC... 28 5.8
AY061282-1|AAL28830.1| 378|Drosophila melanogaster LD20087p pro... 28 7.7
AE014134-264|AAF51367.2| 378|Drosophila melanogaster CG7420-PA ... 28 7.7
>AY118868-1|AAM50728.1| 156|Drosophila melanogaster GM26647p
protein.
Length = 156
Score = 215 bits (524), Expect = 3e-56
Identities = 99/148 (66%), Positives = 120/148 (81%)
Frame = -1
Query: 454 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 275
M VTVKD++Q + K VA LKKTGK+KVP+ MD+VKTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1 MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASI 60
Query: 274 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 95
LRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++ ARKALQ+LE +LVEK DGG
Sbjct: 61 LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGG 120
Query: 94 RILTTQGRRDLDRIAAQVRLKAKQQAKQ 11
R L++ G+RDLDRIA Q+ K + AKQ
Sbjct: 121 RKLSSIGQRDLDRIANQIVFKQRDAAKQ 148
>AF216206-1|AAF65682.1| 156|Drosophila melanogaster ribosomal
protein S19 protein.
Length = 156
Score = 215 bits (524), Expect = 3e-56
Identities = 99/148 (66%), Positives = 120/148 (81%)
Frame = -1
Query: 454 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 275
M VTVKD++Q + K VA LKKTGK+KVP+ MD+VKTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1 MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASI 60
Query: 274 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 95
LRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++ ARKALQ+LE +LVEK DGG
Sbjct: 61 LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGG 120
Query: 94 RILTTQGRRDLDRIAAQVRLKAKQQAKQ 11
R L++ G+RDLDRIA Q+ K + AKQ
Sbjct: 121 RKLSSIGQRDLDRIANQIVFKQRDAAKQ 148
>AE014298-2436|AAN09413.1| 156|Drosophila melanogaster CG4464-PC,
isoform C protein.
Length = 156
Score = 215 bits (524), Expect = 3e-56
Identities = 99/148 (66%), Positives = 120/148 (81%)
Frame = -1
Query: 454 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 275
M VTVKD++Q + K VA LKKTGK+KVP+ MD+VKTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1 MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASI 60
Query: 274 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 95
LRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++ ARKALQ+LE +LVEK DGG
Sbjct: 61 LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGG 120
Query: 94 RILTTQGRRDLDRIAAQVRLKAKQQAKQ 11
R L++ G+RDLDRIA Q+ K + AKQ
Sbjct: 121 RKLSSIGQRDLDRIANQIVFKQRDAAKQ 148
>AE014298-2435|AAN09412.1| 156|Drosophila melanogaster CG4464-PB,
isoform B protein.
Length = 156
Score = 215 bits (524), Expect = 3e-56
Identities = 99/148 (66%), Positives = 120/148 (81%)
Frame = -1
Query: 454 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 275
M VTVKD++Q + K VA LKKTGK+KVP+ MD+VKTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1 MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASI 60
Query: 274 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 95
LRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++ ARKALQ+LE +LVEK DGG
Sbjct: 61 LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGG 120
Query: 94 RILTTQGRRDLDRIAAQVRLKAKQQAKQ 11
R L++ G+RDLDRIA Q+ K + AKQ
Sbjct: 121 RKLSSIGQRDLDRIANQIVFKQRDAAKQ 148
>AE014298-2434|AAF48633.1| 156|Drosophila melanogaster CG4464-PA,
isoform A protein.
Length = 156
Score = 215 bits (524), Expect = 3e-56
Identities = 99/148 (66%), Positives = 120/148 (81%)
Frame = -1
Query: 454 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 275
M VTVKD++Q + K VA LKKTGK+KVP+ MD+VKTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1 MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASI 60
Query: 274 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 95
LRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++ ARKALQ+LE +LVEK DGG
Sbjct: 61 LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGG 120
Query: 94 RILTTQGRRDLDRIAAQVRLKAKQQAKQ 11
R L++ G+RDLDRIA Q+ K + AKQ
Sbjct: 121 RKLSSIGQRDLDRIANQIVFKQRDAAKQ 148
>X73153-1|CAA51677.1| 156|Drosophila melanogaster ribosomal protein
S19 protein.
Length = 156
Score = 214 bits (523), Expect = 5e-56
Identities = 98/148 (66%), Positives = 120/148 (81%)
Frame = -1
Query: 454 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 275
M VTVKD++Q + K VA LKKTGK+KVP+ MD++KTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1 MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIIKTAKFKELAPYDPDWFYVRCASI 60
Query: 274 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 95
LRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++ ARKALQ+LE +LVEK DGG
Sbjct: 61 LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGG 120
Query: 94 RILTTQGRRDLDRIAAQVRLKAKQQAKQ 11
R L++ G+RDLDRIA Q+ K + AKQ
Sbjct: 121 RKLSSIGQRDLDRIANQIVFKQRDAAKQ 148
>AY119257-1|AAM51117.1| 155|Drosophila melanogaster SD22440p
protein.
Length = 155
Score = 176 bits (428), Expect = 1e-44
Identities = 81/146 (55%), Positives = 107/146 (73%)
Frame = -1
Query: 454 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 275
M VTVK+++Q + K +AA LKK+GK+ VPE +KT +FKE AP D DWFY RCA+I
Sbjct: 1 MPGVTVKEIDQHVLTKNMAAFLKKSGKIFVPEQAVYMKTGKFKETAPTDDDWFYTRCASI 60
Query: 274 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 95
+RH+Y+RSP GV TK++ GRKRNGV PS CRSS RKALQ+LEA +VE+ DGG
Sbjct: 61 MRHLYLRSPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCIRKALQALEAANMVERHPDGG 120
Query: 94 RILTTQGRRDLDRIAAQVRLKAKQQA 17
R LT QG+R+LDRIA ++ K ++++
Sbjct: 121 RKLTPQGQRNLDRIANKIVAKQRERS 146
>AE014297-3411|AAN13960.1| 155|Drosophila melanogaster CG5338-PB
protein.
Length = 155
Score = 176 bits (428), Expect = 1e-44
Identities = 81/146 (55%), Positives = 107/146 (73%)
Frame = -1
Query: 454 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 275
M VTVK+++Q + K +AA LKK+GK+ VPE +KT +FKE AP D DWFY RCA+I
Sbjct: 1 MPGVTVKEIDQHVLTKNMAAFLKKSGKIFVPEQAVYMKTGKFKETAPTDDDWFYTRCASI 60
Query: 274 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 95
+RH+Y+RSP GV TK++ GRKRNGV PS CRSS RKALQ+LEA +VE+ DGG
Sbjct: 61 MRHLYLRSPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCIRKALQALEAANMVERHPDGG 120
Query: 94 RILTTQGRRDLDRIAAQVRLKAKQQA 17
R LT QG+R+LDRIA ++ K ++++
Sbjct: 121 RKLTPQGQRNLDRIANKIVAKQRERS 146
>AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin protein.
Length = 16215
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -1
Query: 469 PTQGKMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDL 347
P + K+ V ++ VE+ K + V +KT KVK P+H DL
Sbjct: 6143 PEEVKLEEVDLQHVEK-KEDEIVQEEKRKTRKVKKPKHEDL 6182
>AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC,
isoform C protein.
Length = 18074
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -1
Query: 469 PTQGKMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDL 347
P + K+ V ++ VE+ K + V +KT KVK P+H DL
Sbjct: 6143 PEEVKLEEVDLQHVEK-KEDEIVQEEKRKTRKVKKPKHEDL 6182
>AY061282-1|AAL28830.1| 378|Drosophila melanogaster LD20087p
protein.
Length = 378
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +1
Query: 19 PAAWPLDEPGQRFCQGLVYLVW*ECDHRPELSQQASM--PPTIAKPCVQYCLMTCRNVKV 192
P P +EP QR GL + D++ + + + PP I CL C VK+
Sbjct: 139 PVKLPREEPAQRISFGLRHCAVLTQDNKIYVFGRLRIMDPPPIELDITATCLHRCNTVKI 198
Query: 193 *LH 201
+H
Sbjct: 199 QVH 201
>AE014134-264|AAF51367.2| 378|Drosophila melanogaster CG7420-PA
protein.
Length = 378
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +1
Query: 19 PAAWPLDEPGQRFCQGLVYLVW*ECDHRPELSQQASM--PPTIAKPCVQYCLMTCRNVKV 192
P P +EP QR GL + D++ + + + PP I CL C VK+
Sbjct: 139 PVKLPREEPAQRISFGLRHCAVLTQDNKIYVFGRLRIMDPPPIELDITATCLHRCNTVKI 198
Query: 193 *LH 201
+H
Sbjct: 199 QVH 201
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,056,905
Number of Sequences: 53049
Number of extensions: 453514
Number of successful extensions: 1131
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1684597257
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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