Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11m15
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    32   0.12 
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    29   0.63 
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    28   1.5  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    28   1.5  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   4.4  
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    26   5.9  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   7.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   7.8  

>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
 Frame = -3

Query: 760 NEKLLNKLESSSYNKSNMDQLIAIVNFLEK---KNINYILNVMPVMQDERKMSKRKKKVI 590
           N+++  +L+  +  + N+D L+A VNFL K    N   ++ V   M +    +KR ++++
Sbjct: 143 NDEINERLKKLTEEQQNVDMLVAKVNFLSKHLHDNEEKLMQVNAKMDEVLAENKRLQQLL 202

Query: 589 NNN 581
           ++N
Sbjct: 203 DHN 205


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 13/68 (19%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
 Frame = -3

Query: 757 EKLLNKLESSSYN-KSNMDQLIAIVNFLEK--KNINYILNVMPVMQDERKMSKRKKKVIN 587
           E  +   +S S++ +    +++A++N  ++  ++IN++ +   +  ++ K +  K++V+ 
Sbjct: 421 EDEVTNFDSRSFSLRLRRSEIVALINTFDRLSRSINFVDDFKQIYSEQHKPASFKRRVLR 480

Query: 586 NNKYILFN 563
             K +LF+
Sbjct: 481 RIKQLLFS 488


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = -3

Query: 685  NFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNS---WYTKIKQPEWPSSPA 515
            + L +K  N   ++  V + + K + +K  V+ N   IL NS   W   IK+P   S P 
Sbjct: 902  SILYEKQKNLQASITEVSK-QLKSNSKKVTVLRNKLNILNNSLSKWKCLIKKPSDFSEPV 960

Query: 514  MWDLVKNTPELADFV 470
              D   N  +L   +
Sbjct: 961  SMDFTSNDEQLVQLL 975


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 136 EYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT 41
           EY+P SI G+K  K  +  K+   IKN +  T
Sbjct: 472 EYLPDSIKGTKFYKLPIELKEDEEIKNLKTDT 503


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -3

Query: 640  PVMQDERKMSKRKKKVINNNKYILFNSWYTK 548
            P++ + +K+S +  K++ +N Y   N W+ +
Sbjct: 1060 PILPNLQKLSTQYSKIVRDNDYGNVNCWFNR 1090


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -3

Query: 760 NEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYI 653
           NEK ++ + +S  N+S + QL A +  L +K ++YI
Sbjct: 307 NEKFISVVGTSEANQSALMQLYAALISLGRKIVSYI 342


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 629 LHDRHYVEDIVNVLFF 676
           L+DR YVE I+++LFF
Sbjct: 253 LYDRVYVEKILDILFF 268


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 22/78 (28%), Positives = 40/78 (51%)
 Frame = +3

Query: 132 YSVVDGATGNLSATVLNLAIFLVMKSRVNTSS*MLLSRGATLLLNVSFNKL*NSE*SLSR 311
           YSV++ +T   S+TVLN +  +   S +N+S+ +  S        ++ + + NS   ++ 
Sbjct: 591 YSVLNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITS 650

Query: 312 ISQLSFNSAKFALVSTAV 365
            S L  NS+     STA+
Sbjct: 651 SSVL--NSSTPITSSTAL 666


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,499,963
Number of Sequences: 5004
Number of extensions: 74704
Number of successful extensions: 289
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)