Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11m15
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538...    31   1.2  
04_04_1312 + 32565447-32565585,32566008-32566060,32566139-325667...    30   2.7  
04_04_1311 - 32559549-32559674,32559761-32560078,32560158-325602...    30   2.7  
01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678     29   4.7  
04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471           28   8.2  
03_05_0092 - 20714102-20717902                                         28   8.2  

>06_03_1313 - 29252335-29252446,29253430-29253671,29253770-29253848,
            29254991-29255130,29255262-29255571,29255810-29255952,
            29256106-29256306,29256453-29256581,29256921-29257199,
            29258036-29259720,29261255-29261764,29261901-29262108,
            29264347-29264458,29264594-29264763
          Length = 1439

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -3

Query: 307  DKLYSEFYSLLNETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKTVALKLP 155
            DKL   + S+L +    N+   L+++YD+     F+T    K K  A +LP
Sbjct: 1141 DKLRQWYLSMLQKAIKENIVVELTNLYDQF----FVTAKECKIKVSAARLP 1187


>04_04_1312 +
           32565447-32565585,32566008-32566060,32566139-32566771,
           32566844-32566972,32567052-32567144,32567220-32567336,
           32567412-32567512,32567603-32567870,32568236-32568265,
           32568361-32568572,32568650-32568731,32568804-32569555,
           32569640-32569811,32570412-32570498,32570578-32570895,
           32570982-32571107
          Length = 1103

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -3

Query: 817 NMVNMPEQQFSTETAAVCKNEKLLNK 740
           NM  +P++QF+  TA++CK  K+ NK
Sbjct: 103 NMEMLPDKQFAIWTASLCKPAKVQNK 128


>04_04_1311 -
           32559549-32559674,32559761-32560078,32560158-32560244,
           32560845-32561016,32561101-32561852,32561925-32562006,
           32562084-32562295,32562391-32562420,32562786-32563074,
           32563143-32563243,32563319-32563435,32563511-32563603,
           32563683-32563811,32563884-32564516,32564765-32564844,
           32565152-32565164
          Length = 1077

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -3

Query: 817 NMVNMPEQQFSTETAAVCKNEKLLNK 740
           NM  +P++QF+  TA++CK  K+ NK
Sbjct: 70  NMEMLPDKQFAIWTASLCKPAKVQNK 95


>01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678
          Length = 261

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -3

Query: 604 KKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFV 470
           +   I+ N Y+   +W T+  QP    S   W L K +   A +V
Sbjct: 133 RSSTISENSYLCVATWDTRAPQPSQIESAVRWALRKRSQNKAVYV 177


>04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471
          Length = 331

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 556 YTKIKQPEWPSSPAMWDLVKNTPELADFVFI-FDHTEK 446
           + +  +PEWPSS A+     N PEL   V +  D T K
Sbjct: 169 HDQTNKPEWPSSVAVQHDQTNKPELPSSVAVQHDQTNK 206


>03_05_0092 - 20714102-20717902
          Length = 1266

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +2

Query: 497 FHQIPHGRATRPLGLLDLSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHYVEDIVNVLFF 676
           F  +       PL +  L++ T   N+  ++N L L   H +    D+H+++ I  ++FF
Sbjct: 571 FFMVTESSGDVPLEVRHLTIMT--NNLSKLINDLSLKISHSSG--SDQHFLQRIRTIIFF 626

Query: 677 QEIYNSN 697
            +  NS+
Sbjct: 627 ADFSNSD 633


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,204,585
Number of Sequences: 37544
Number of extensions: 459593
Number of successful extensions: 1140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)