Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11m15
         (849 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-2469|AAS64704.1| 1853|Drosophila melanogaster CG32972-P...    33   0.65 
BT024254-1|ABC86316.1|  199|Drosophila melanogaster IP15861p pro...    32   1.1  
AE013599-545|AAF59166.2|  922|Drosophila melanogaster CG14766-PA...    32   1.1  
BT025830-1|ABF85730.1|  258|Drosophila melanogaster IP09124p pro...    31   1.5  
AE014298-1416|AAF46559.1| 1161|Drosophila melanogaster CG15311-P...    31   2.0  
AE014296-3423|AAF51643.2| 1959|Drosophila melanogaster CG11451-P...    30   3.5  
AE013599-2836|AAM70845.1|  947|Drosophila melanogaster CG7097-PB...    30   3.5  
AE013599-2835|AAF57595.1| 1218|Drosophila melanogaster CG7097-PA...    30   3.5  

>AE014134-2469|AAS64704.1| 1853|Drosophila melanogaster CG32972-PA,
            isoform A protein.
          Length = 1853

 Score = 32.7 bits (71), Expect = 0.65
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = -3

Query: 238  SSIYDEVLTRDFITKNMAKFKTVALKLPV-APSTTEYVPTSISGSKKRKNSVPAKQRSSI 62
            +SI D   T+D  T   +      LK    AP+TT+ +PT+ +     K        SS 
Sbjct: 1553 TSISDSTTTKDITTTAASPTTAEDLKTTTPAPTTTDNIPTTTNAPTTTKEITTTTSASST 1612

Query: 61   KNRRNTTAAPTLLMVSDNT 5
                 TTA  T   ++  T
Sbjct: 1613 DETTTTTAPTTTKDITTTT 1631


>BT024254-1|ABC86316.1|  199|Drosophila melanogaster IP15861p
           protein.
          Length = 199

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
 Frame = -3

Query: 799 EQQFSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVM--QD 626
           +QQ   +     +NE L N +++ + N+  M      ++++ K N+N ++   P M  +D
Sbjct: 135 QQQKQQQEQLQQQNETLSNNIKNFNNNEKIMQ-----LSYITKSNVNSVIK-FPAMSVKD 188

Query: 625 ERKMSKRKKK 596
           ++K++K+KKK
Sbjct: 189 KKKLNKKKKK 198


>AE013599-545|AAF59166.2|  922|Drosophila melanogaster CG14766-PA
            protein.
          Length = 922

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -3

Query: 385  PASKKRQTAVLTNANLA--ELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDEVLT 212
            P S+KR+   +T  N +  E K        LYS +  +++ET  N  +PL    Y   L 
Sbjct: 827  PVSEKRELISITKPNQSDCEAKHRSHKDVNLYSRYPKIISETLENLTSPLRFENYTRELL 886

Query: 211  RDFITKNMAK 182
            + +   ++ K
Sbjct: 887  KAYKALDVTK 896


>BT025830-1|ABF85730.1|  258|Drosophila melanogaster IP09124p
           protein.
          Length = 258

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
 Frame = -3

Query: 799 EQQFSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVM--QD 626
           +QQ   +     +NE L N +++ + N+  M      ++++ K N+N ++   P M  +D
Sbjct: 195 QQQKQQQEQLQQQNETLSNNIKNFNNNEKIMQ-----LSYITKSNVNSVIK-FPAMSVKD 248

Query: 625 ERKMSKRKKK 596
           ++K+ K+KKK
Sbjct: 249 KKKLKKKKKK 258


>AE014298-1416|AAF46559.1| 1161|Drosophila melanogaster CG15311-PA
           protein.
          Length = 1161

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 172 VALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPT 29
           +A K PVA STT  VPT+++ SK    S  +   ++      T  +P+
Sbjct: 340 LAKKYPVATSTTTKVPTTLATSKTTSRSSSSSTTTTTMATSTTATSPS 387


>AE014296-3423|AAF51643.2| 1959|Drosophila melanogaster CG11451-PA
           protein.
          Length = 1959

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 151 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLM 20
           AP  T Y PT  S  +  ++S+  + R S KN+  T A  +L M
Sbjct: 227 APVATLYPPTQQSLMELEEDSIVREMRESTKNQTKTPAQKSLFM 270


>AE013599-2836|AAM70845.1|  947|Drosophila melanogaster CG7097-PB,
           isoform B protein.
          Length = 947

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 21/85 (24%), Positives = 36/85 (42%)
 Frame = -3

Query: 838 FQXLQKSNMVNMPEQQFSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNIN 659
           +Q L +S+    P    S       ++E   N LE S    S+MDQLI ++  + K    
Sbjct: 460 YQNLLRSSSGETPAGSSSAGNNCDYRHENNQNGLEDSPRRHSSMDQLIGLLENMGKSPRT 519

Query: 658 YILNVMPVMQDERKMSKRKKKVINN 584
             L+      D+    + +  ++NN
Sbjct: 520 RSLSDGGTQDDDEAEKEAQPDLLNN 544


>AE013599-2835|AAF57595.1| 1218|Drosophila melanogaster CG7097-PA,
           isoform A protein.
          Length = 1218

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 21/85 (24%), Positives = 36/85 (42%)
 Frame = -3

Query: 838 FQXLQKSNMVNMPEQQFSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNIN 659
           +Q L +S+    P    S       ++E   N LE S    S+MDQLI ++  + K    
Sbjct: 731 YQNLLRSSSGETPAGSSSAGNNCDYRHENNQNGLEDSPRRHSSMDQLIGLLENMGKSPRT 790

Query: 658 YILNVMPVMQDERKMSKRKKKVINN 584
             L+      D+    + +  ++NN
Sbjct: 791 RSLSDGGTQDDDEAEKEAQPDLLNN 815


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,442,742
Number of Sequences: 53049
Number of extensions: 798236
Number of successful extensions: 2483
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2471
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4065385896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)