Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11m13
         (281 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   0.89 
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   2.7  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    25   2.7  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    23   8.3  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    23   8.3  

>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 26.2 bits (55), Expect = 0.89
 Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 56  HIFFQSDIRWR-QQHDMHKQHIFKVLVLFVKSFIFNI*IFQQCVFQLYIKH*ISFEYF 226
           ++  + D RW+ ++H + KQ ++  ++  + +FI        C+F  +I+H     +F
Sbjct: 549 NLLVRKDGRWQFREHRILKQ-LWPYIIAMILNFIVRSSFIFYCIFPNHIQHSSGISFF 605


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 147 HLFLIFKYFNSVFFNYIL 200
           +L+++F YF S+F  Y+L
Sbjct: 198 YLYVLFTYFISIFLLYVL 215


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 127 YFEYVLFMHIMLLAPSYIRLEENMFYLLLC 38
           +  Y L +  M+ +  ++  E+N+FYL LC
Sbjct: 361 FLHYCLDISEMISSYLHVEDEKNVFYLALC 390


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 112 LFMHIMLLAPSYIRLEEN 59
           +F+  +LL+P+Y  LEEN
Sbjct: 110 VFLDSLLLSPNYEYLEEN 127


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 124 FEYVLFMHIMLLAPSYIRLEENMFYL 47
           F   +F HI LLA S  ++E   +Y+
Sbjct: 306 FGQTVFHHIALLASSKSKMEAARYYM 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,101,342
Number of Sequences: 5004
Number of extensions: 20518
Number of successful extensions: 36
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)