Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11m13
         (281 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0117 + 14813472-14814113,14814194-14814404,14814552-148148...    27   3.0  
11_01_0751 - 6320726-6321108,6321138-6321278,6321404-6321574,632...    26   5.2  
03_01_0296 + 2284385-2285629,2287632-2288594                           26   5.2  
05_01_0509 - 4250217-4250240,4250617-4250711,4251050-4251365           25   6.8  
01_06_0287 + 28224956-28225216,28225385-28225641,28225789-282258...    25   9.0  

>09_04_0117 +
           14813472-14814113,14814194-14814404,14814552-14814846,
           14815059-14815448,14815528-14815605,14815692-14815926
          Length = 616

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/37 (27%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 159 LKINDFTNKT-NTLNMCCLCISCCWRHLISDWKKICF 52
           +K +   N+T +T+++C +   CC+ +++  W+K  F
Sbjct: 3   VKASSADNRTRSTVSLCIVIGMCCFFYILGAWQKSGF 39


>11_01_0751 -
           6320726-6321108,6321138-6321278,6321404-6321574,
           6321912-6322191
          Length = 324

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 50  IKHIFFQSDIRWRQQHDMHKQHIFKVLVLFVKSFIFNI*IFQQC-VFQLY 196
           I  I    D  WR+ H+   +  +KV+VL        + + ++C VFQLY
Sbjct: 193 INEIALSIDTEWREDHEPDDKKCYKVVVL-------QLCVNRRCLVFQLY 235


>03_01_0296 + 2284385-2285629,2287632-2288594
          Length = 735

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -3

Query: 84  HLISDWKKICFIYYYV-KRY 28
           HL SDW K+  +  YV KRY
Sbjct: 408 HLFSDWTKVMVVSEYVRKRY 427


>05_01_0509 - 4250217-4250240,4250617-4250711,4251050-4251365
          Length = 144

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 153 INDFTNKTNTLNMC-CLCISCCWRHLISD 70
           I D  ++    ++C C C+S  WR LISD
Sbjct: 28  IVDILSRLPVKSVCRCKCVSRRWRGLISD 56


>01_06_0287 +
           28224956-28225216,28225385-28225641,28225789-28225899,
           28225926-28226021,28226078-28226134,28226348-28226438,
           28226610-28226678,28227091-28227180,28227390-28227440,
           28227535-28227753,28228064-28228127,28228211-28228299
          Length = 484

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -3

Query: 162 ILKIN-DFTNKTNTLNMCCLCISC 94
           +L +N DFT   + L +C L +SC
Sbjct: 176 VLSVNYDFTKLKDELQLCALILSC 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,824,614
Number of Sequences: 37544
Number of extensions: 89712
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)