Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11m13
         (281 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical pr...    26   4.8  
Z83239-4|CAB05808.1|  336|Caenorhabditis elegans Hypothetical pr...    25   8.4  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    25   8.4  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    25   8.4  
AF125971-5|AAD14765.1|  484|Caenorhabditis elegans Hypothetical ...    25   8.4  

>Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical
           protein F14F8.12 protein.
          Length = 329

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 86  RQQHDMHKQHIFKVLVLFVKSFIFNI*IFQ 175
           + QH   +QHI+    +F++SF+    IFQ
Sbjct: 187 KNQHLHSQQHIYLQNYIFIQSFLVETPIFQ 216


>Z83239-4|CAB05808.1|  336|Caenorhabditis elegans Hypothetical
           protein T09F5.8 protein.
          Length = 336

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 118 YVLFMHIMLLAPSYIRLEENMFYLL 44
           Y++   +M++A S I + EN FY+L
Sbjct: 96  YIMVTLLMMVAVSTISIFENRFYIL 120


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3

Query: 144  NHLFLIFKYFNSVFFNYILNIKYLLNIFTSKLR 242
            +H++   +  N + F Y  ++ +L+ IFT  L+
Sbjct: 3752 SHIYHTLQQLNEIHFLYHYSLDFLVEIFTHVLK 3784


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3

Query: 144  NHLFLIFKYFNSVFFNYILNIKYLLNIFTSKLR 242
            +H++   +  N + F Y  ++ +L+ IFT  L+
Sbjct: 3752 SHIYHTLQQLNEIHFLYHYSLDFLVEIFTHVLK 3784


>AF125971-5|AAD14765.1|  484|Caenorhabditis elegans Hypothetical
           protein Y4C6B.2a protein.
          Length = 484

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +2

Query: 92  QHDMHKQHIF--KVLVLFVKSFIF 157
           QHDM K H F   +++ F+  FIF
Sbjct: 224 QHDMKKPHHFSRSIIIAFIIIFIF 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,846,691
Number of Sequences: 27780
Number of extensions: 108031
Number of successful extensions: 225
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)