Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11m13
         (281 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   0.71 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   1.2  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   2.9  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   3.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   5.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   5.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   5.0  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    19   8.8  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    19   8.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    19   8.8  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 23.0 bits (47), Expect = 0.71
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 107 YAYHVVGAILYQTGRKYVLFI 45
           YA  VVG +LY  G+ ++L I
Sbjct: 155 YAASVVGYLLYSLGQVFMLCI 175


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 84  HLISDWKKICFIYY 43
           H +S+W K+ F+Y+
Sbjct: 326 HEMSEWVKVVFLYW 339


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 17  ILHQYLLT***IKHIFFQSDIRWRQQHDMHKQHI 118
           I H   LT   IK  F    ++W+++H M   +I
Sbjct: 41  IAHALCLTERQIKIWFQNRRMKWKKEHKMASMNI 74


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 50  IKHIFFQSDIRWRQQHD 100
           I HI   SD+ W+  H+
Sbjct: 292 ICHILCMSDLHWQLPHN 308


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 7/33 (21%)
 Frame = +2

Query: 125 VLVLFVKSFIFNI-------*IFQQCVFQLYIK 202
           V VLFV SF+F I        IF  CV ++Y K
Sbjct: 12  VNVLFVNSFLFVIAAQDSSGRIFTICVPEIYSK 44


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 7/33 (21%)
 Frame = +2

Query: 125 VLVLFVKSFIFNI-------*IFQQCVFQLYIK 202
           V VLFV SF+F I        IF  CV ++Y K
Sbjct: 12  VNVLFVNSFLFVIAAQDSSGRIFTICVPEIYSK 44


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 7/33 (21%)
 Frame = +2

Query: 125 VLVLFVKSFIFNI-------*IFQQCVFQLYIK 202
           V VLFV SF+F I        IF  CV ++Y K
Sbjct: 12  VNVLFVNSFLFVIAAQDSSGRIFTICVPEIYSK 44


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 147 HLFLIFKYFNSVFFNYILNIKYLLNIFTSKLR 242
           ++F I K  N     YI+ +  +    TSKL+
Sbjct: 61  NIFKIIKSTNEKITRYIIRMFLISQQKTSKLK 92


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 147 HLFLIFKYFNSVFFNYILNIKYLLNIFTSKLR 242
           ++F I K  N     YI+ +  +    TSKL+
Sbjct: 44  NIFKIIKSTNEKITRYIIRMFLISQQKTSKLK 75


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 50  IKHIFFQSDIRWR 88
           I H+F   D++WR
Sbjct: 283 ILHLFCLLDVQWR 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,642
Number of Sequences: 438
Number of extensions: 1433
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5494764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)