Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11m10
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p...    71   2e-13
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    36   0.008
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   2.7  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   3.5  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   6.2  

>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 232

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 22/185 (11%)
 Frame = -2

Query: 505 IASMKDPNSIIKNTEKVVVIKDKYPKAKVHYLVLPHE-EINSIYKLN--KSHISLLEEF- 338
           I S +   ++I   + VV+++D +PK+K+H L++  +  +  ++ L     H SL+E+  
Sbjct: 42  IESPESYKNVIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLV 101

Query: 337 --------GNIFKELKE------ENES---ELRAGFHAIPSMQRMHMHVISTDMISTSLK 209
                   G IF E +        NE+    ++ GFHA PSM  +H+H+++ D +S SLK
Sbjct: 102 SYVQGDLSGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTLDHVSPSLK 161

Query: 208 TKIHWNSFCTKFFIPYDELLQELKDIGNIRKIPSELHTSLMKTPLQCNQCSFK-PKNMPE 32
              H+ SF + FF+  D     L   G +        TSL +  L+C +C     ++  +
Sbjct: 162 NSAHYISFTSPFFVKIDTPTSNLPTRGTL--------TSLFQEDLKCWRCGETFGRHFTK 213

Query: 31  LKDHL 17
           LK HL
Sbjct: 214 LKAHL 218


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
 Frame = -2

Query: 442 DKYPKAKVHYLVLPHE-EINSIYKLNKSHISLLEEFGN-IFKELKEE---NESELRAGFH 278
           D+   + ++ + + H  +I SI  L   HI LLE   N +  E+ ++   ++++L+   H
Sbjct: 176 DRQTMSALNLMAIVHATDIASIRDLKYKHIPLLENIRNKVLTEVPKQFSVDKNQLKMFVH 235

Query: 277 AIPSMQRMHMHVISTD 230
            +PS   +H+H++  D
Sbjct: 236 YLPSYYHLHVHILHVD 251


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = -2

Query: 418 HYLVLPHEEINSIYKLNKSHISLLEEFGNIFKELKEENESEL 293
           ++++ PH + +   K+ + H +L  +F  +F+ L  ENE  +
Sbjct: 408 YFMIFPHSDQSLQNKVFELHSTLAIKFDELFRLLNLENEESV 449


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 397  EEINSIYKLNKSHISLLEEFGNIFKEL 317
            EE+ S++ ++KS  S   +FGN+F  L
Sbjct: 1321 EEVCSVFNISKSVCSKYVQFGNVFNLL 1347


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
 Frame = -2

Query: 418 HYLVLPH--EEINSIYKLNKSHISLLEEFGNIFKELKEENESELRAGFHAIPSMQRMHMH 245
           H+L+  H   EI  +Y L  S     ++     ++      S ++   H I   +  +  
Sbjct: 317 HFLISDHIFSEIQKVYFLPSSQNDSFDDVVACLRQKSTPYLSFIKKARHLIQVSRDKYKL 376

Query: 244 VISTDMISTSLKTKIHWNSFCTKFFIPYDELLQEL 140
            IST+ I   + +++ W  F  K  + Y  L+QE+
Sbjct: 377 PISTEEIKPVVYSQVTWTEF-EKKLLRY--LVQEM 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,215,381
Number of Sequences: 5004
Number of extensions: 62446
Number of successful extensions: 190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)