Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11m10
(881 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 83 2e-16
06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743... 36 0.057
04_04_0631 - 26728144-26728228,26728321-26728398,26728584-267286... 34 0.17
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72... 32 0.53
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438... 32 0.53
01_01_1130 + 8959909-8960396,8960588-8960638,8960736-8960827,896... 32 0.70
12_02_0356 + 17915029-17916236,17932970-17933283,17933936-179342... 31 1.2
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329... 30 2.1
05_01_0105 + 696604-696846,696880-697989 30 2.8
12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561 28 8.6
11_01_0443 - 3399226-3399242,3399551-3399731,3399847-3399936,340... 28 8.6
07_03_0438 - 18200329-18200430,18201203-18201335,18201964-182020... 28 8.6
06_03_1377 - 29692895-29692899,29700435-29702190 28 8.6
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465... 28 8.6
01_01_1115 + 8828544-8828620,8829608-8829779,8829873-8830183,883... 28 8.6
>03_02_0651 + 10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 83.4 bits (197), Expect = 2e-16
Identities = 53/173 (30%), Positives = 94/173 (54%), Gaps = 14/173 (8%)
Frame = -2
Query: 493 KDPNSIIKNTEKVVVIKDKYPK-------------AKVHYLVLPHEE-INSIYKLNKSHI 356
K+ +S+++ ++ VV+ D YPK AK H LV+ ++ ++S+ + K H+
Sbjct: 560 KNSDSLLEISDDFVVLNDLYPKCSNWHLSSTSYLQAKRHVLVVSRKDGLDSLADVKKEHL 619
Query: 355 SLLEEFGNIFKELKEENESELRAGFHAIPSMQRMHMHVISTDMISTSLKTKIHWNSFCTK 176
LL + + ++ L +PSM+++H+H+IS D S SLK K HWNSF T
Sbjct: 620 PLLRRMHSAGVKWAQKF---LEEDSSLVPSMRQLHLHIISQDFNSASLKNKKHWNSFTTT 676
Query: 175 FFIPYDELLQELKDIGNIRKIPSELHTSLMKTPLQCNQCSFKPKNMPELKDHL 17
FF+ ++++E+ G+ I S+ M+ L+C++C N+P+LK H+
Sbjct: 677 FFLDSVDVIEEIDQRGS-ATISSDDRVLAME--LRCHRCRSAHPNIPKLKSHI 726
>06_03_1059 +
27273267-27273316,27274077-27274163,27274245-27274392,
27274615-27274732,27274798-27274859
Length = 154
Score = 35.5 bits (78), Expect = 0.057
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = -2
Query: 622 LLKFYIHTYIGKSTPIMSKRKNTTSSIPSKTPKHWSLGLIASMKDPNSIIKNTEKVVVIK 443
LL+F H I ST + K ++ + P + I + + P++++ EKV+ +
Sbjct: 15 LLRFVRH--IASSTNEEAAAKAAAATADTGGPTIFDK--IIAKEIPSNVVYEDEKVLAFR 70
Query: 442 DKYPKAKVHYLVLP--HEEINSIYKLNKSHISLL 347
D P+A VH LV+P + + + K H+ +L
Sbjct: 71 DINPQAPVHVLVIPKIRDGLTGLDKAEPRHVEIL 104
>04_04_0631 -
26728144-26728228,26728321-26728398,26728584-26728650,
26728748-26728824,26729961-26730012,26730248-26730294,
26730457-26730527
Length = 158
Score = 33.9 bits (74), Expect = 0.17
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = -2
Query: 418 HYLVLPHEEI---NSIYKLNKSH--ISLLEEFGNIFKELKEENESELRAGFHAIP--SMQ 260
HYLV+P E I N++ + + H +S + G N E R GFH P S+
Sbjct: 58 HYLVIPIEHIPTVNNLQRTTEDHQLVSHMLAVGRDLLNRDAPNSEEQRFGFHQPPFNSVD 117
Query: 259 RMHMHVIS 236
+H+H ++
Sbjct: 118 HLHLHCLA 125
>06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-725639,
725738-725840,726106-726264,726728-726846,726891-727004,
727119-727277,727404-727451,728464-728640,729064-729116,
729549-729661,729793-729873,729966-730081,730786-730905,
732321-732429,732593-732770,732852-732920,733102-733233,
733657-733766,733843-734003,734081-734171,734258-734355,
734499-734619,734732-734892,734985-735090,735142-735236,
735828-735852,736008-736084,736196-736282,736372-736421,
736558-736639,736735-736795,737064-737116,737206-737395,
737472-737595,737860-737962,738064-738156,740344-740422,
740508-740584,740915-741043,742614-742731,742816-742913,
743457-743546,744998-745123,745238-745351,745488-745611,
745865-746019,746104-746201,746357-746600
Length = 1926
Score = 32.3 bits (70), Expect = 0.53
Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 3/133 (2%)
Frame = -2
Query: 394 EINSIYKLNKSHISLLEEFGNIFKELKEENESELRAGFHAIPSMQRMHMHVIS---TDMI 224
EI SI L+K S E F L+ N + P + +MH + S D+I
Sbjct: 765 EIRSIEMLHKRFESFPEAFAKTLSPLRISNGPVAQG-----PEITKMHASIFSPFWNDII 819
Query: 223 STSLKTKIHWNSFCTKFFIPYDELLQELKDIGNIRKIPSELHTSLMKTPLQCNQCSFKPK 44
+ + NS TKF +LL + GN+R + L K L + S
Sbjct: 820 KSLREEDYISNSIMTKFSFREMDLLMMPSNCGNLRLVQWPLFLLTSKIMLANDYASDCKD 879
Query: 43 NMPELKDHLLKHQ 5
+ EL D + + +
Sbjct: 880 SQYELWDRISRDE 892
>03_02_0838 +
11641484-11642030,11643614-11643650,11643784-11643841,
11646176-11646265,11646796-11646913,11648093-11648277,
11648330-11648455,11648578-11648634,11648741-11648821,
11649068-11649102,11649265-11649354,11649443-11649599,
11649785-11649901
Length = 565
Score = 32.3 bits (70), Expect = 0.53
Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -2
Query: 487 PNSIIKNTEKVVVIKDKYPKAKVHYLVLP--HEEINSIYKLNKSHISLL 347
P++++ + EKV+ +D P+A H +++P + + + K + H+ +L
Sbjct: 205 PSTVVFDDEKVLAFRDINPQAPTHIVIIPKVKDGLTGLSKAEERHVEIL 253
>01_01_1130 +
8959909-8960396,8960588-8960638,8960736-8960827,
8960964-8961054,8961877-8961937,8962172-8962216,
8962318-8962391,8962565-8962637,8963288-8963345,
8963398-8963468,8963801-8963837,8964040-8964128,
8964207-8964263,8964366-8964449,8964529-8964627,
8964765-8964869,8965145-8965216,8965308-8965497,
8965810-8966207
Length = 744
Score = 31.9 bits (69), Expect = 0.70
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = -2
Query: 250 MHVISTDMISTSLKTKIHWNSF---CTKFFIPYDELLQELKDIGNIRKIPSELHTSLMKT 80
MH++S +I K I WN + +PYD L+Q +DI IR + ++L +
Sbjct: 171 MHLVSRYLIREE-KEMIDWNKVERPTPEMVVPYDSLVQAPRDIPEIRNLLNKLAVLKLNG 229
Query: 79 PLQCNQCSFKPKNMPELKDHL 17
L PK E++ L
Sbjct: 230 GLGTTMECVAPKCTIEVRSGL 250
>12_02_0356 +
17915029-17916236,17932970-17933283,17933936-17934244,
17934613-17935439
Length = 885
Score = 31.1 bits (67), Expect = 1.2
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Frame = -2
Query: 505 IASMKDPNSIIKNTEKVVVIKDKYPKAKVHYL--------VLPHEEINSIYKLNKSHISL 350
+++++ I K+ +Y AK+H+L +LPHE +N +Y ++
Sbjct: 57 VSNLETAYEIWNKLAKIHEGASEYKDAKLHFLKIQYETFSILPHESVNDMYGRLNVIVND 116
Query: 349 LEEFGNIFKELKEENESELRAGFHAIPSMQRMHMHVISTDMISTSLKTKIHWN 191
L+ G + +L E+ + LRA ++ M ++ M SL KI+ N
Sbjct: 117 LKGLGATYTDL-EDAQKMLRALPEKYETLVTMLINSDMLRMTPASLLVKINTN 168
>02_01_0459 +
3298780-3298788,3298900-3299037,3299174-3299207,
3299528-3299531,3299814-3299949,3300034-3300090,
3301689-3301786,3301876-3301947,3302056-3302228,
3302552-3302698,3303113-3303336,3305300-3305306,
3305634-3305800,3306033-3306068,3306787-3307004,
3307115-3307172,3307761-3307842,3308045-3308207,
3308594-3308598,3308700-3308885,3308969-3309548,
3309642-3309774,3309880-3309948,3310184-3310395,
3310654-3310891,3311228-3311386,3311501-3311926,
3312010-3312447,3312593-3312712,3312784-3313266,
3313471-3314009,3314178-3314667,3314836-3314904,
3315735-3315839,3315940-3316158,3316254-3316508,
3316602-3316651,3317175-3317284,3317372-3317454,
3317560-3317772,3317870-3318040
Length = 2391
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = -2
Query: 538 SKTPKHWSLGLIASMKDPNSIIKNTEKVVVIKDKYPKAKVH-YLVLPHEEINSIYKLNKS 362
SKT S S +PN E + +KV Y PHE +NS+ KL+ +
Sbjct: 765 SKTEASLSTEPTVSSGEPNLAHAKVESPFQVDGSANPSKVDPYCTPPHETLNSMPKLSST 824
Query: 361 HISLLEEFGNIFK 323
H+ +F + K
Sbjct: 825 HLPENSKFIKLMK 837
>05_01_0105 + 696604-696846,696880-697989
Length = 450
Score = 29.9 bits (64), Expect = 2.8
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Frame = -2
Query: 439 KYPKAKVHYL--------VLPHEEINSIYKLNKSHISLLEEFGNIFKELKEENESELRAG 284
+Y AK+H+L +LPHE +N +Y ++ L+ FG + +L E + LRA
Sbjct: 93 EYKDAKLHFLNIQYETFSMLPHESVNDMYGRLNVIVNGLKGFGANYTDL-EVAQKMLRAL 151
Query: 283 FHAIPSMQRMHMHVISTDMISTSLKTKIHWN 191
++ M ++ + M SL KI+ N
Sbjct: 152 PEKYETLVTMLINSDMSRMTPASLLGKINTN 182
>12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561
Length = 495
Score = 28.3 bits (60), Expect = 8.6
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Frame = -2
Query: 439 KYPKAKVHYL--------VLPHEEINSIYKLNKSHISLLEEFGNIFKELKEENESELRAG 284
+Y AK+H+L +LPHE +N +Y ++ L+ G + +L E + LRA
Sbjct: 92 EYKDAKLHFLKIQCETFSMLPHESVNDMYGRLNVIVNDLKGLGATYTDL-EVAQKMLRAL 150
Query: 283 FHAIPSMQRMHMHVISTDMISTSLKTKIHWN 191
++ M ++ + M SL KI+ N
Sbjct: 151 PEKYETLVTMLINSDMSRMTPASLLGKINTN 181
>11_01_0443 -
3399226-3399242,3399551-3399731,3399847-3399936,
3400377-3400459,3400540-3400667,3400747-3401002,
3401094-3401199,3401300-3401366,3401467-3401580,
3401811-3401889,3402189-3402359,3403135-3403267,
3403874-3404033,3404119-3404261
Length = 575
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 280 HAIPSMQRMHMHVISTDMISTSLKTKIHWNSFCTK 176
HA SM +HM + S + L +H SFC K
Sbjct: 339 HAAISMVSLHMRIFSLLIPCFFLMVSVHLTSFCVK 373
>07_03_0438 -
18200329-18200430,18201203-18201335,18201964-18202034,
18202377-18202466,18203200-18203288,18203886-18203961,
18204094-18204264
Length = 243
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -2
Query: 169 IPYDELLQELKDIGNIRKIPSELHTSLM 86
+PYD+L+QEL D+ N+R++ L M
Sbjct: 114 LPYDQLMQEL-DVSNVRELEDFLINECM 140
>06_03_1377 - 29692895-29692899,29700435-29702190
Length = 586
Score = 28.3 bits (60), Expect = 8.6
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Frame = -2
Query: 439 KYPKAKVHYL--------VLPHEEINSIYKLNKSHISLLEEFGNIFKELKEENESELRAG 284
+Y AK+H+L +LPHE +N +Y ++ L+ G + +L E + LRA
Sbjct: 104 EYKDAKLHFLKIQYETFSMLPHESVNDMYGRLNVIVNDLKRLGANYTDL-EVAQKMLRAL 162
Query: 283 FHAIPSMQRMHMHVISTDMISTSLKTKIHWN 191
++ M ++ + M SL KI+ N
Sbjct: 163 PEKYETLVTMLINSDMSRMTPASLLGKINTN 193
>01_06_0923 + 33044283-33044433,33044826-33045242,33046209-33046538,
33046806-33046876,33047283-33047357,33047435-33047578,
33047645-33047816,33047933-33048616,33048711-33048767,
33048850-33048956,33049485-33049610,33050221-33050295,
33050387-33050499,33050789-33050905,33051384-33051444,
33051690-33051763,33052267-33052388,33052472-33052620,
33053525-33053635,33053946-33054008,33054689-33054722,
33055253-33055375,33055971-33056033,33056130-33056196,
33056311-33056356,33056446-33056552,33056923-33056971,
33057208-33057273,33057544-33057630
Length = 1286
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 652 IPNSCYVGIFFFKGFYDLVIETFKSYLILIYIHIFMK 762
I N+ VGIF+F GF +E+ S +++ ++++ +
Sbjct: 1229 IGNNAIVGIFYFIGFGLFCLESLLSVVVIQQVYMYFR 1265
>01_01_1115 +
8828544-8828620,8829608-8829779,8829873-8830183,
8830934-8830983,8832349-8832405,8832742-8832761,
8834637-8835236,8835283-8836002
Length = 668
Score = 28.3 bits (60), Expect = 8.6
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = -2
Query: 559 NTTSSIPS---KTPKHWSLGLIASMKDPNSIIKNTEKVVVIKDKYPKAK--VHYLVLPHE 395
N+ SI S K K+W G +A+ + + +V +KD++ K K V +
Sbjct: 90 NSNDSIESNFKKNDKYW--GDVAAAYNSTTPKSRVRQVKQVKDRFGKIKKKVGNFCCSWK 147
Query: 394 EINSIYKLNKSHISLL 347
E NS+Y +SH L+
Sbjct: 148 EANSLYASGESHDDLM 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,974,692
Number of Sequences: 37544
Number of extensions: 313005
Number of successful extensions: 818
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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