Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11m10
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical pr...    56   3e-08
Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical pr...    33   0.36 
AF519108-1|AAM74222.1|  909|Caenorhabditis elegans EOR-1 protein.      32   0.47 
AF502568-1|AAM74151.1|  909|Caenorhabditis elegans EOR-1 protein.      32   0.47 
AF100669-8|AAK39268.1|  909|Caenorhabditis elegans Egl-1 suppres...    32   0.47 
Z71266-8|CAA95846.2|  729|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z54270-9|CAO82016.1|  787|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z54270-5|CAA91031.2| 1339|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AL132902-7|CAB81993.1|  485|Caenorhabditis elegans Hypothetical ...    29   5.8  
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ...    29   5.8  
Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical pr...    28   7.7  
X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger pro...    28   7.7  
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    28   7.7  
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    28   7.7  
AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical ...    28   7.7  

>U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical
           protein C26F1.7 protein.
          Length = 175

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 43/126 (34%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
 Frame = -2

Query: 475 IKNTEKVVVIKDKYPKAKVHYLVLPHEEINSIYKLNKSHISLLEEFGNIFKELKEEN--- 305
           +K  +  VVI D  PKAK HYLVL  + I     L  + + LLEE     +EL  E+   
Sbjct: 25  LKENKSCVVINDIKPKAKNHYLVLSKQHIAKPTDLTVADVPLLEEMEKTGRELLREHLKK 84

Query: 304 -------ESELRAGFHAIP--SMQRMHMHVISTDMISTSLKTKIHWNSFCTKFFIPYDEL 152
                  E  LR GFH  P  S+  +HMH+I        +  K+ +     K F P  EL
Sbjct: 85  KGEADTVEDMLRIGFHLPPLLSVHHLHMHIIYPISDMGLISRKLTFRP--GKVFKPAREL 142

Query: 151 LQELKD 134
           + +LK+
Sbjct: 143 IDQLKE 148


>Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical
           protein F21C3.3 protein.
          Length = 130

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
 Frame = -2

Query: 511 GLIASMKDPNSIIKNTEKVVVIKDKYPKAKVHYLVLPHEEINSIYKLNKSHISLLEEF-- 338
           G I   + P  II   ++ +   D  P+A +H+LV+P   I+ +     S  +L+ +   
Sbjct: 24  GKIIRKEIPAKIIFEDDEALAFHDVSPQAPIHFLVIPKRRIDMLENAVDSDAALIGKLMV 83

Query: 337 --GNIFKELKEEN--ESELRAGFHAIPSMQRMHMHVI 239
               + K+L   N     +  G     S+  +H+HV+
Sbjct: 84  TASKVAKQLGMANGYRVVVNNGKDGAQSVFHLHLHVL 120


>AF519108-1|AAM74222.1|  909|Caenorhabditis elegans EOR-1 protein.
          Length = 909

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 91  LMKTPLQCNQCSFKPKNMPELKDHLLKH 8
           L + P +C+QC +      +LK+H++KH
Sbjct: 647 LEEKPFKCDQCEYASSRRDKLKEHIIKH 674


>AF502568-1|AAM74151.1|  909|Caenorhabditis elegans EOR-1 protein.
          Length = 909

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 91  LMKTPLQCNQCSFKPKNMPELKDHLLKH 8
           L + P +C+QC +      +LK+H++KH
Sbjct: 647 LEEKPFKCDQCEYASSRRDKLKEHIIKH 674


>AF100669-8|AAK39268.1|  909|Caenorhabditis elegans Egl-1
           suppressor/dio uptake defective/raf enhancer protein 1
           protein.
          Length = 909

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 91  LMKTPLQCNQCSFKPKNMPELKDHLLKH 8
           L + P +C+QC +      +LK+H++KH
Sbjct: 647 LEEKPFKCDQCEYASSRRDKLKEHIIKH 674


>Z71266-8|CAA95846.2|  729|Caenorhabditis elegans Hypothetical
           protein R06C7.9 protein.
          Length = 729

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 127 NIRKIPSELHTSLMKTPLQCNQCSFKPKNMPELKDHLLKH 8
           N++ + S  H S  K   QCN CS    N   L DH + H
Sbjct: 641 NLQALCSHRHESHGKEMFQCNNCSETLPNYRALHDHNMMH 680


>Z54270-9|CAO82016.1|  787|Caenorhabditis elegans Hypothetical
           protein F11C1.5c protein.
          Length = 787

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -2

Query: 232 DMISTSLKTKIHWNSFCTKFFIPYDELLQELKDIGNIR--KIPSELHTSLMKTPLQCNQC 59
           +++S S K  I  N+F TKF +   E  +ELK  G +   ++P++     MK P   +  
Sbjct: 316 EVLSDSEKDLI--NTFKTKFELSTHERTRELKTDGALHTVQVPADKRKIQMKLPTPSHPT 373

Query: 58  SFKPKNMPELKDHLL 14
           SF    +P  K   L
Sbjct: 374 SFASTWIPTAKQENL 388


>Z54270-5|CAA91031.2| 1339|Caenorhabditis elegans Hypothetical
           protein F11C1.5b protein.
          Length = 1339

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -2

Query: 232 DMISTSLKTKIHWNSFCTKFFIPYDELLQELKDIGNIR--KIPSELHTSLMKTPLQCNQC 59
           +++S S K  I  N+F TKF +   E  +ELK  G +   ++P++     MK P   +  
Sbjct: 316 EVLSDSEKDLI--NTFKTKFELSTHERTRELKTDGALHTVQVPADKRKIQMKLPTPSHPT 373

Query: 58  SFKPKNMPELKDHLL 14
           SF    +P  K   L
Sbjct: 374 SFASTWIPTAKQENL 388


>Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical
           protein F11C1.5a protein.
          Length = 1804

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -2

Query: 232 DMISTSLKTKIHWNSFCTKFFIPYDELLQELKDIGNIR--KIPSELHTSLMKTPLQCNQC 59
           +++S S K  I  N+F TKF +   E  +ELK  G +   ++P++     MK P   +  
Sbjct: 316 EVLSDSEKDLI--NTFKTKFELSTHERTRELKTDGALHTVQVPADKRKIQMKLPTPSHPT 373

Query: 58  SFKPKNMPELKDHLL 14
           SF    +P  K   L
Sbjct: 374 SFASTWIPTAKQENL 388


>Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical
           protein Y6G8.4 protein.
          Length = 328

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 587 FTNICMNVEFQQLHIINLIFMKYLTVVMLVYF 682
           F+NI  N  F++ HI+ +IF+ +   V+ + F
Sbjct: 84  FSNILSNPSFEKFHIVLIIFLLFGGAVVTIQF 115


>AL132902-7|CAB81993.1|  485|Caenorhabditis elegans Hypothetical
           protein Y71A12B.8 protein.
          Length = 485

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 145 ELKDIGNIRKIPSELHT-SLMKTPLQCNQCSFKPKNMPELKDH 20
           E++   N    P++  + ++ +TP  C+QC FK  N+  L  H
Sbjct: 427 EIRQTPNQNGTPNQKSSLAVGQTPTSCDQCQFKSLNINTLNTH 469


>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
            protein Y81G3A.3 protein.
          Length = 1696

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/82 (25%), Positives = 33/82 (40%)
 Frame = -2

Query: 379  YKLNKSHISLLEEFGNIFKELKEENESELRAGFHAIPSMQRMHMHVISTDMISTSLKTKI 200
            + L   H  L+E      K L ++  +EL    H I    R H H    DM++  +  K 
Sbjct: 1195 FTLKIGHAQLIEAQIRHLK-LSDDVRAELLDALHLISVSDRPHSHKEKMDMLTPKIGAKA 1253

Query: 199  HWNSFCTKFFIPYDELLQELKD 134
               +  TK  IP ++     K+
Sbjct: 1254 --ANIITKLLIPVEDNFGAFKE 1273


>Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical protein
            F52E10.1 protein.
          Length = 1201

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 490  DPNSIIKNTEKVVVIKDKYPKAKVHYLVLPHEEINSIYKLNK 365
            DP+S+ K+    +V + K P+  +H++    E I   Y+LN+
Sbjct: 1122 DPDSLAKSARVRMVKQVKSPEHMIHHIEEIDESIGHNYRLNR 1163


>X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger protein
            protein.
          Length = 1203

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 490  DPNSIIKNTEKVVVIKDKYPKAKVHYLVLPHEEINSIYKLNK 365
            DP+S+ K+    +V + K P+  +H++    E I   Y+LN+
Sbjct: 1124 DPDSLAKSARVRMVKQVKSPEHMIHHIEEIDESIGHNYRLNR 1165


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 121 RKIPSELHTSLMKTPLQCNQCSFKPKNMPELKDHLLKH 8
           RK   + H +L    +QC+ CS   ++   L+ H+++H
Sbjct: 69  RKKNLDAHMALHLKEIQCDNCSLVFQSEKSLQSHIIRH 106


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 121 RKIPSELHTSLMKTPLQCNQCSFKPKNMPELKDHLLKH 8
           RK   + H +L    +QC+ CS   ++   L+ H+++H
Sbjct: 187 RKKNLDAHMALHLKEIQCDNCSLVFQSEKSLQSHIIRH 224


>AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical
           protein W04B5.2 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = -2

Query: 457 VVVIKDKYPKAKVHYLVLPHEEINSIYKLNKSHISLLEEFGNIFKELKEENESELRAG 284
           +++I +KY K   ++L++ +  +NS+   + ++    E+  N F+  K+ +  E R G
Sbjct: 225 IIIIANKYKKCYKNFLLIIYSLLNSLTHFSSTNCENFEK-KNSFRRHKDMDGYECRRG 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,220,520
Number of Sequences: 27780
Number of extensions: 338503
Number of successful extensions: 995
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)