Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11m10
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    25   0.70 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.92 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.92 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   4.9  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
          protein.
          Length = 69

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 79 PLQCNQCSFKPKNMPELKDHLLKH 8
          P +C +CS+   N   L  HL  H
Sbjct: 16 PFKCEKCSYSCVNKSMLNSHLKSH 39


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 412 LVLPHEEINSIYKLNKSHISLLEEFGNIFKELKEENESELRAGFHAIP 269
           LVL  E+  + YKL ++   L ++    ++EL  E +   R  +  +P
Sbjct: 342 LVLMSEQFEADYKLTRNLELLTDKLQQTYRELDGEKQKTDRLLYSVLP 389


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 412 LVLPHEEINSIYKLNKSHISLLEEFGNIFKELKEENESELRAGFHAIP 269
           LVL  E+  + YKL ++   L ++    ++EL  E +   R  +  +P
Sbjct: 342 LVLMSEQFEADYKLTRNLELLTDKLQQTYRELDGEKQKTDRLLYSVLP 389


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 222 PHPSKQKYIGIVSVQSFLFPT 160
           P+PS   YIG++++ +   PT
Sbjct: 636 PYPSYYSYIGVLTLVATSMPT 656


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 3/146 (2%)
 Frame = -2

Query: 439 KYPKAKVHYLVLPHEEINSIYKLNKSHISLLEEFGNIFKELKEENESELRAGFHAIPSMQ 260
           K+ K    ++       N  Y  +KS+ S       +FK+ KEE ++  R     + + Q
Sbjct: 122 KHQKLDQKFIFPQENNYNDNYFYSKSNGSNSSNSDVLFKQNKEEEQTINRKNSDYLDN-Q 180

Query: 259 RMHMHVISTDMISTSLKTKIHWNSFCTKFFIPYDEL---LQELKDIGNIRKIPSELHTSL 89
            + M   +T+  S +      +  FC    +   EL   L+++K I       + + T L
Sbjct: 181 EVSME--NTENKSCTDSDIEKYKMFCNLENVKLKELRIILEDIKHINTRHNTKNGMKTLL 238

Query: 88  MKTPLQCNQCSFKPKNMPELKDHLLK 11
            +T +   +     K +  +  +L+K
Sbjct: 239 SETDIWEVEQILAKKEIKGVPTYLIK 264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,052
Number of Sequences: 438
Number of extensions: 4217
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)