Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11m05
         (872 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0232 - 15882589-15882720,15882799-15882889,15882987-158830...    30   2.8  
09_04_0394 - 17261008-17262476,17262554-17262743                       29   6.4  
08_01_0083 - 604175-605776                                             28   8.5  
08_01_0082 - 588269-588434,590800-591653                               28   8.5  
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962     28   8.5  

>09_04_0232 -
           15882589-15882720,15882799-15882889,15882987-15883087,
           15883494-15883592,15883693-15883830,15883918-15884508,
           15884819-15884989,15885068-15885203,15885561-15885592,
           15886280-15886336,15886434-15886686,15886762-15886850,
           15887181-15887234,15887498-15887689,15887777-15887938
          Length = 765

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
 Frame = +2

Query: 644 SSQNGISVPLLMYCCGC---NICIFSPRSINNSS--RVVRLSRCEATFCNSTIFAYSIIG 808
           S ++G++  L +   GC   N    SP  ++ +S  R +   RC+ T C+S+  +  + G
Sbjct: 257 SLEDGLNALLNIEIRGCKLQNRISASPPPLHAASLPRGMVTMRCDITTCSSSHVSLLVSG 316

Query: 809 LFETTCNDDRIISTVVKSTVV 871
             + TC DD+++ + +K  ++
Sbjct: 317 SAQ-TCFDDQLLESHIKDEII 336


>09_04_0394 - 17261008-17262476,17262554-17262743
          Length = 552

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 68  KPNEGRRRNRFVPSLLSDVWNVWLLIVAC 154
           KP    RR   +PS  S VW V LL+V C
Sbjct: 4   KPTRPHRRPPPLPSKTSGVWPVALLVVLC 32


>08_01_0083 - 604175-605776
          Length = 533

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 284 TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 171
           TPAP F R+  +T  + +  P G   HI ++++ P + +
Sbjct: 218 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 256


>08_01_0082 - 588269-588434,590800-591653
          Length = 339

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 284 TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 171
           TPAP F R+  +T  + +  P G   HI ++++ P + +
Sbjct: 221 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 259


>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
          Length = 774

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 165 EVTEHATINSQTFHTSDSSEGTKRFRRLPSF 73
           +++EH T  S+  HT  S+   ++ RRL SF
Sbjct: 696 KISEHDTDKSRRPHTKKSATSPRKMRRLSSF 726


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,578,599
Number of Sequences: 37544
Number of extensions: 470555
Number of successful extensions: 1323
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)