Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11m04
(822 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0112 - 839048-839552,839638-839720,839828-839982,840078-84... 89 4e-18
01_06_1291 + 36032088-36032299,36032737-36033314,36034494-36036229 87 1e-17
03_06_0484 + 34233042-34233258,34235317-34237049 87 2e-17
03_02_0546 - 9381989-9383733,9385838-9386054 87 2e-17
03_02_0540 + 9340379-9340592,9341250-9342988 87 2e-17
05_05_0109 - 22454539-22456268,22457069-22457279 86 3e-17
11_08_0075 + 28173220-28173433,28175348-28177083 85 5e-17
03_05_0877 + 28443481-28443538,28443641-28443911,28444028-284442... 72 5e-13
08_01_0654 - 5639419-5641449 70 3e-12
05_04_0392 - 20889699-20891726 67 2e-11
05_04_0052 - 17515344-17517353 67 2e-11
02_05_0491 + 29470575-29471351,29471574-29471806,29472697-294728... 51 1e-06
06_03_1137 + 27903012-27904196,27904330-27904542,27905775-279058... 42 6e-04
01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165 36 0.051
06_01_0426 + 3050332-3050526,3050864-3051116,3051923-3051980,305... 32 0.48
07_03_1420 + 26448009-26448085,26448302-26448394,26448634-264487... 30 1.9
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 29 3.4
11_01_0219 - 1710206-1710246,1710479-1710620,1710699-1710752,171... 29 3.4
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 29 3.4
12_02_0404 - 18633355-18633783,18634215-18634232 29 4.5
04_03_0661 - 18468244-18469580,18469610-18469619 29 5.9
03_05_0057 + 20350971-20351405 28 7.8
>02_01_0112 -
839048-839552,839638-839720,839828-839982,840078-840557,
840855-841097,841189-841403,841489-841756,842477-842525
Length = 665
Score = 89.0 bits (211), Expect = 4e-18
Identities = 37/78 (47%), Positives = 60/78 (76%)
Frame = -3
Query: 766 RVESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDNQDAESEEYK 587
R+++RN+LE+Y Y++KN + DK+KL K+ ++K K+EEAL A++WL++NQ AE EEY+
Sbjct: 564 RIDARNQLETYVYNMKNTVGDKDKLADKLESEEKEKVEEALKEALEWLDENQTAEKEEYE 623
Query: 586 KQKKTLEDVVQPIIAKLY 533
++ K +E V PII+ +Y
Sbjct: 624 EKLKEVEAVCNPIISAVY 641
>01_06_1291 + 36032088-36032299,36032737-36033314,36034494-36036229
Length = 841
Score = 87.4 bits (207), Expect = 1e-17
Identities = 36/78 (46%), Positives = 62/78 (79%)
Frame = -3
Query: 766 RVESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDNQDAESEEYK 587
+V+++N LE+YAY+++N ++D +K+ +K++ DDK K+E+A+D AI WL+ NQ AE++E++
Sbjct: 733 KVDAKNALENYAYNMRNTIKD-DKIASKLSADDKKKIEDAIDGAINWLDSNQLAEADEFE 791
Query: 586 KQKKTLEDVVQPIIAKLY 533
+ K LE + PIIAK+Y
Sbjct: 792 DKMKELESICNPIIAKMY 809
>03_06_0484 + 34233042-34233258,34235317-34237049
Length = 649
Score = 87.0 bits (206), Expect = 2e-17
Identities = 38/78 (48%), Positives = 62/78 (79%)
Frame = -3
Query: 766 RVESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDNQDAESEEYK 587
+V+++N LE+YAY+++N +QD EK+ +K+ DDK K+E+A++ AI+WL++NQ AE EE++
Sbjct: 542 KVDAKNSLENYAYNMRNTIQD-EKIASKLPADDKKKIEDAVEQAIQWLDNNQLAEVEEFE 600
Query: 586 KQKKTLEDVVQPIIAKLY 533
+ K LE + PIIAK+Y
Sbjct: 601 DKMKELEGLCNPIIAKMY 618
>03_02_0546 - 9381989-9383733,9385838-9386054
Length = 653
Score = 87.0 bits (206), Expect = 2e-17
Identities = 38/78 (48%), Positives = 62/78 (79%)
Frame = -3
Query: 766 RVESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDNQDAESEEYK 587
+VE+RN LE+YAY+++N ++D EK+ +K+ DDK K+E+A++ AIKWL+ NQ AE++E++
Sbjct: 542 KVEARNALENYAYNMRNTVRD-EKIASKLPADDKKKIEDAIEDAIKWLDGNQLAEADEFE 600
Query: 586 KQKKTLEDVVQPIIAKLY 533
+ K LE + PII+K+Y
Sbjct: 601 DKMKELESLCNPIISKMY 618
>03_02_0540 + 9340379-9340592,9341250-9342988
Length = 650
Score = 86.6 bits (205), Expect = 2e-17
Identities = 37/78 (47%), Positives = 61/78 (78%)
Frame = -3
Query: 766 RVESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDNQDAESEEYK 587
+V+++N LE+YAY+++N ++D +K+ +K+ + DK K+E+A+D AI WL+ NQ AE+EE++
Sbjct: 541 KVDAKNSLENYAYNMRNTIKD-DKIASKLPEADKKKIEDAIDGAISWLDSNQLAEAEEFE 599
Query: 586 KQKKTLEDVVQPIIAKLY 533
+ K LE V PIIAK+Y
Sbjct: 600 DKMKELEGVCNPIIAKMY 617
>05_05_0109 - 22454539-22456268,22457069-22457279
Length = 646
Score = 86.2 bits (204), Expect = 3e-17
Identities = 36/78 (46%), Positives = 61/78 (78%)
Frame = -3
Query: 766 RVESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDNQDAESEEYK 587
+V+++N LE+YAY+++N ++D EK+ +K+ DDK ++E+A+D AI WL+ NQ AE++E++
Sbjct: 540 KVDAKNALENYAYNMRNTIKD-EKIASKLAADDKKRIEDAIDGAISWLDTNQLAEADEFE 598
Query: 586 KQKKTLEDVVQPIIAKLY 533
+ K LE + PIIAK+Y
Sbjct: 599 DKMKELEGICNPIIAKMY 616
>11_08_0075 + 28173220-28173433,28175348-28177083
Length = 649
Score = 85.4 bits (202), Expect = 5e-17
Identities = 38/78 (48%), Positives = 60/78 (76%)
Frame = -3
Query: 766 RVESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDNQDAESEEYK 587
+VES+N LE+YAY+++N ++D EK+ +K+ DK K+E+A+D AI+WL+ NQ AE++E+
Sbjct: 541 KVESKNALENYAYNMRNTIKD-EKIASKLPAADKKKIEDAIDQAIQWLDGNQLAEADEFD 599
Query: 586 KQKKTLEDVVQPIIAKLY 533
+ K LE + PIIAK+Y
Sbjct: 600 DKMKELEGICNPIIAKMY 617
>03_05_0877 +
28443481-28443538,28443641-28443911,28444028-28444242,
28444329-28445057,28445143-28445297,28445384-28445965
Length = 669
Score = 72.1 bits (169), Expect = 5e-13
Identities = 35/82 (42%), Positives = 56/82 (68%), Gaps = 4/82 (4%)
Frame = -3
Query: 766 RVESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDN----QDAES 599
RV++RN LE+Y Y +++ ++D G K+ DDD+ +ME AL A++WLEDN + AE
Sbjct: 570 RVDARNRLENYVYRMRSAVRDGGMAG-KIGDDDRERMESALTEALEWLEDNDGGARTAEK 628
Query: 598 EEYKKQKKTLEDVVQPIIAKLY 533
E+Y+++ K +E V PII ++Y
Sbjct: 629 EDYEEKLKEVEQVCGPIIKQVY 650
>08_01_0654 - 5639419-5641449
Length = 676
Score = 69.7 bits (163), Expect = 3e-12
Identities = 32/78 (41%), Positives = 53/78 (67%)
Frame = -3
Query: 766 RVESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDNQDAESEEYK 587
+V++RN LE+Y Y+IKN L K + + ++K K+EEA+ A +WL+ N DA EEY+
Sbjct: 576 QVDARNSLEAYVYNIKNTLGGK--MADAMEGEEKDKVEEAVREAYEWLDGNPDAGKEEYE 633
Query: 586 KQKKTLEDVVQPIIAKLY 533
++ + LEDV P+++ +Y
Sbjct: 634 EKLRELEDVCNPVMSAVY 651
>05_04_0392 - 20889699-20891726
Length = 675
Score = 66.9 bits (156), Expect = 2e-11
Identities = 30/78 (38%), Positives = 53/78 (67%)
Frame = -3
Query: 766 RVESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDNQDAESEEYK 587
+V++RN LE+Y Y++K+ L K + + ++K K+EEA+ A +WL+ N DA EEY+
Sbjct: 576 QVDARNSLEAYVYNVKSTLGGK--MADAMEGEEKEKVEEAVREAHEWLDGNPDAGKEEYE 633
Query: 586 KQKKTLEDVVQPIIAKLY 533
++ + LEDV P+++ +Y
Sbjct: 634 EKLRELEDVCNPVMSAVY 651
>05_04_0052 - 17515344-17517353
Length = 669
Score = 66.9 bits (156), Expect = 2e-11
Identities = 31/78 (39%), Positives = 49/78 (62%)
Frame = -3
Query: 766 RVESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDNQDAESEEYK 587
R +RN LE+Y Y +KN + E GA + +K K+E A+ A +WL+ NQD EEY+
Sbjct: 572 RAGARNSLEAYVYGVKNAVVGGEMAGA-MDGGEKEKVEAAVMEAYEWLDGNQDVGKEEYE 630
Query: 586 KQKKTLEDVVQPIIAKLY 533
++ + LEDV P+++ +Y
Sbjct: 631 EKLRELEDVCNPVMSAVY 648
>02_05_0491 +
29470575-29471351,29471574-29471806,29472697-29472856,
29473149-29473394,29473492-29473628,29473874-29474207,
29474283-29474444,29474717-29474791,29474866-29474966,
29475042-29475111,29475210-29475266,29475357-29475418,
29475505-29475577,29475663-29475884
Length = 902
Score = 51.2 bits (117), Expect = 1e-06
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = -3
Query: 760 ESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWL-EDNQDAESEEYKK 584
E +N LESY YS+K +L++ ++ T+ ++ E L+ WL D +DA++ E+K+
Sbjct: 668 ELKNNLESYIYSMKEKLEENTEILTVSTEQERESFAEKLNEVQDWLYMDGEDAQANEFKE 727
Query: 583 QKKTLEDVVQPIIAKL 536
+ L+ + PI+ +L
Sbjct: 728 RLDQLKAIGDPILFRL 743
>06_03_1137 +
27903012-27904196,27904330-27904542,27905775-27905867,
27905940-27906008,27906412-27906612,27906688-27906834,
27907524-27907652,27909001-27909131,27909240-27909333
Length = 753
Score = 41.9 bits (94), Expect = 6e-04
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = -3
Query: 760 ESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDNQDAESEE-YKK 584
E +N LESY Y +N+L ++ + A TD ++ ++ +L WL + D E+E Y
Sbjct: 572 ERKNALESYVYDTRNKLSERYRSFA--TDSEREEISLSLQQTEDWLYEEGDDETEAVYNS 629
Query: 583 QKKTLEDVVQPI 548
+ + L+ +V PI
Sbjct: 630 KLEELKRLVDPI 641
>01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165
Length = 648
Score = 35.5 bits (78), Expect = 0.051
Identities = 25/73 (34%), Positives = 39/73 (53%)
Frame = -3
Query: 766 RVESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDNQDAESEEYK 587
RV++ N LE+Y +KN G + + KA+ AA +WL+ N AE E+Y+
Sbjct: 575 RVDALNMLETYI--VKNTAVT----GGETDCEAKAR------AASEWLDGNPAAEKEDYE 622
Query: 586 KQKKTLEDVVQPI 548
++ K LED P+
Sbjct: 623 EKLKELEDACGPV 635
>06_01_0426 +
3050332-3050526,3050864-3051116,3051923-3051980,
3052054-3052105,3052601-3052678,3053012-3053188,
3053594-3053806
Length = 341
Score = 32.3 bits (70), Expect = 0.48
Identities = 23/71 (32%), Positives = 37/71 (52%)
Frame = -3
Query: 748 ELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDNQDAESEEYKKQKKTL 569
+LE AY Q +L ++ + DK ++ L A K L+ N+D SEE + ++K
Sbjct: 152 KLECGAYPTYTQHLYPARLEERI-NMDKTRLNTLLKHATKELQKNEDKLSEE-RSRRKEY 209
Query: 568 EDVVQPIIAKL 536
ED+V I A +
Sbjct: 210 EDMVMAIQASI 220
>07_03_1420 +
26448009-26448085,26448302-26448394,26448634-26448727,
26448822-26448859,26448999-26449090,26449179-26449258,
26449332-26449388,26449420-26449449,26449505-26449597,
26449766-26449840,26449888-26449959
Length = 266
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/81 (24%), Positives = 38/81 (46%)
Frame = -1
Query: 321 TNLTESRSDRVSAVAHARVSETCACFCKKNVHFVFLVKAIVNCAFVNMEIDNIGRFSLPV 142
T+ RS +V A S+T A ++N+ + FLV+ + E+D++ FSL
Sbjct: 149 TDQVIERSKKVVAQTVEVGSQTAAALSQQNIPWTFLVRKTEQMKRIGNELDSV-HFSLKK 207
Query: 141 SNRLFSHTMRRPQCSVCM*LF 79
++++ R+ C+ F
Sbjct: 208 ASQMVKEIGRQVATDKCIMAF 228
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = -3
Query: 706 DKEKLGAKVTDDDKAKMEEALDAAIKWLEDNQDAESEEYKKQKKTLEDV 560
D+E +G DD+ +E ++A IK +++ +AE EE+ + +T DV
Sbjct: 437 DEETIGGTEMADDENLTKEQIEAEIKKIKE-ANAEDEEFPDEVETPLDV 484
>11_01_0219 -
1710206-1710246,1710479-1710620,1710699-1710752,
1710838-1710909,1711631-1711699,1711807-1711848,
1711946-1712014,1712130-1712267,1712390-1712500,
1712576-1712726,1713720-1713775,1714076-1714753
Length = 540
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = -3
Query: 760 ESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDNQDAESEEYKKQ 581
E+ NE+E + IK+ + K G + AK + W+E++ D+E EEY +
Sbjct: 158 EAGNEVEDEFFKIKDLDKFMVK-GEEAEYGGGAKQGKKKKKTENWMEEDSDSEDEEYLDE 216
Query: 580 KKTLED 563
+ +D
Sbjct: 217 DEEDDD 222
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = -3
Query: 724 IKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQ 554
++ +L+ KEK A++ K + EEAL + ++ E E KKQ++ E+ Q
Sbjct: 341 VEKELKQKEKEEARMRKQQKKQQEEALRE-----QKRREKEEAEMKKQQRKQEEEAQ 392
>12_02_0404 - 18633355-18633783,18634215-18634232
Length = 148
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = -3
Query: 712 LQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDNQDAESEEYKKQKKTLEDV 560
++ E L +D+K K EEA +++ L+D ++ E EE + + T E+V
Sbjct: 94 IETSEPLNIYKEEDNKDKKEEAEESSSSSLKDEEE-EEEENNEDEDTEEEV 143
>04_03_0661 - 18468244-18469580,18469610-18469619
Length = 448
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = -3
Query: 724 IKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDNQDAESEE--YKKQKKTLEDVVQP 551
+ ++Q++E A ++ K K EEA AA L + E E+ +K+K L ++V P
Sbjct: 102 LAKKMQEEEAARA-AEEERKRKEEEAKRAAEAALNQKKLKEKEKKLLRKEKTRLRNLVAP 160
Query: 550 IIAK 539
++A+
Sbjct: 161 VVAE 164
>03_05_0057 + 20350971-20351405
Length = 144
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -2
Query: 557 AAHHRQTLP-RPGWSTAPGGAG 495
A HHRQ P RP + PGGAG
Sbjct: 40 APHHRQPAPDRPSAAPEPGGAG 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,946,305
Number of Sequences: 37544
Number of extensions: 349585
Number of successful extensions: 1073
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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