Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11m04
         (822 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ302660-1|CAC35525.1|  195|Anopheles gambiae hypothetical prote...    27   0.70 
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    26   1.2  
AY045760-2|AAK84943.1|  169|Anopheles gambiae D7-related 3 prote...    24   4.9  
AJ133854-1|CAB39729.1|  169|Anopheles gambiae D7-related 3 prote...    24   4.9  
AJ000035-1|CAA03871.1|  156|Anopheles gambiae D7r3 protein protein.    24   4.9  
AY045760-4|AAK84945.1|  165|Anopheles gambiae D7-related 4 prote...    23   8.6  
AJ302659-1|CAC35524.1|  165|Anopheles gambiae D7r4 protein protein.    23   8.6  

>AJ302660-1|CAC35525.1|  195|Anopheles gambiae hypothetical protein
           protein.
          Length = 195

 Score = 27.1 bits (57), Expect = 0.70
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 766 RVESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAA 635
           RV +   L+ Y  +I N   +  ++   VTD D AK+E  L  A
Sbjct: 69  RVNTSTGLDDYGTNITNVQINVNRMRRAVTDADLAKLERKLRQA 112


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 688 AKVTDDDKAKMEEALDAAIKWLEDN 614
           A  TD+ +A+ EEA+D   +W++ +
Sbjct: 728 ATTTDEVRARAEEAVDQVQRWMQQH 752


>AY045760-2|AAK84943.1|  169|Anopheles gambiae D7-related 3 protein
           protein.
          Length = 169

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 271 CVRNGRYSIRSRLCEVRRTRPL 336
           C RN   S++ R+CE+R+  P+
Sbjct: 30  CERNIPASLKERVCELRQYTPV 51


>AJ133854-1|CAB39729.1|  169|Anopheles gambiae D7-related 3 protein
           protein.
          Length = 169

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 271 CVRNGRYSIRSRLCEVRRTRPL 336
           C RN   S++ R+CE+R+  P+
Sbjct: 30  CERNIPASLKERVCELRQYTPV 51


>AJ000035-1|CAA03871.1|  156|Anopheles gambiae D7r3 protein protein.
          Length = 156

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 271 CVRNGRYSIRSRLCEVRRTRPL 336
           C RN   S++ R+CE+R+  P+
Sbjct: 30  CERNIPASLKERVCELRQYTPV 51


>AY045760-4|AAK84945.1|  165|Anopheles gambiae D7-related 4 protein
           protein.
          Length = 165

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = +1

Query: 292 SIRSRLCEVRR 324
           S++SRLCE+RR
Sbjct: 34  SLKSRLCEIRR 44


>AJ302659-1|CAC35524.1|  165|Anopheles gambiae D7r4 protein protein.
          Length = 165

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = +1

Query: 292 SIRSRLCEVRR 324
           S++SRLCE+RR
Sbjct: 34  SLKSRLCEIRR 44


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 718,101
Number of Sequences: 2352
Number of extensions: 14326
Number of successful extensions: 33
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 87318630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)