Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11m04
         (822 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    26   0.48 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.64 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.5  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.0  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +2

Query: 236 FLQKQAHVSLTRACATADTRSDLDSVRF---VAHAHSLHSYNKYTHSS*QHCIHPCVGHS 406
           FL+K    +L  A     +R  L S+ F    +  +  H  + Y H+    CIH  +GH 
Sbjct: 286 FLKKNTGFTLRPAAGLLTSRDFLSSLAFRVFQSTQYIRHIKSPY-HTPEPDCIHELLGHM 344

Query: 407 P 409
           P
Sbjct: 345 P 345


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 759 SQETSSKVMLTQSKTNFRIRKNLVLRL 679
           + +TSSKVMLT+   N  + +N+ + L
Sbjct: 15  ASKTSSKVMLTRGTVNDIVSRNITMVL 41


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 513  RPRGRRKMTTSRTSCNQTESQPNVISAQMAA 421
            RP  RR++  + T C+   SQ  VI + M +
Sbjct: 962  RPAYRRRLNVNETVCSDYFSQGGVIESIMVS 992


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 732 LTQSKTNFRIRKNLVLRLLMTTR 664
           L  ++TNFRI+  LV  L+  T+
Sbjct: 389 LNSNETNFRIQAGLVDELVRGTK 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,368
Number of Sequences: 438
Number of extensions: 3698
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)