Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11l23
         (875 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611...    33   0.30 
12_01_0819 + 7545656-7546006,7546087-7546162,7547196-7547401,754...    29   3.7  
01_01_1062 + 8381281-8381490,8382353-8382449,8382546-8382637,838...    29   6.5  

>06_01_0811 -
           6113491-6113925,6114079-6114185,6114569-6114788,
           6115112-6115199,6115301-6115431,6115924-6116099,
           6116465-6116529,6117014-6117094,6117219-6117358,
           6117446-6117532,6117614-6117827,6118102-6118260,
           6118860-6118936,6119629-6119796
          Length = 715

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
 Frame = -1

Query: 854 AQSKKMIL*MPLNPFETLNIESDIIKTEQTDAPATSGDDNN-NRKVVDANEDEYTVDGLK 678
           A SK+M    PL PF  ++I  D++     D P             +D + DE T+  L+
Sbjct: 210 ATSKQMTKREPLRPF--MDIIDDMLAQMLRDDPLFKPSGGKLGEDDMDYDTDENTMASLR 267

Query: 677 --LKSKYVAYYKCLKILVDFLVMYVSKETNMKEYEQ 576
             L+     YY+C      +++  +  E  +K YEQ
Sbjct: 268 RQLRRANEEYYRCKSKYTSYVMEALELEDTIKNYEQ 303


>12_01_0819 +
           7545656-7546006,7546087-7546162,7547196-7547401,
           7547498-7547584,7547673-7547765,7548172-7548326,
           7548470-7548554,7548632-7548718,7548801-7548920,
           7549707-7549808,7549903-7550070
          Length = 509

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -3

Query: 264 NMNTSVDAVTKLIRLQNDVLD-MMREVDQYLNSDTPDYTIESLNAP 130
           N+    +  T+L+RL+  +L   ++  ++++N D PD+T+    AP
Sbjct: 459 NLEPKKEVATRLVRLEKKLLHGCLQAANEFIN-DLPDHTVSPCPAP 503


>01_01_1062 +
           8381281-8381490,8382353-8382449,8382546-8382637,
           8382729-8382860,8382975-8383160,8383244-8383407,
           8383514-8383592,8384484-8384612,8385102-8385229,
           8385348-8385711
          Length = 526

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -1

Query: 788 DIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYKCLKIL 633
           +I+K  +TD    +GD N   +++D  E    ++ L+       Y K +KIL
Sbjct: 438 NILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKIL 489


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,110,989
Number of Sequences: 37544
Number of extensions: 426920
Number of successful extensions: 1303
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)