Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11l22
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   421   e-120
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   421   e-120
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   4.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   7.7  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  421 bits (1037), Expect = e-120
 Identities = 195/237 (82%), Positives = 210/237 (88%)
 Frame = -1

Query: 809 PKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXX 630
           PKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF        
Sbjct: 64  PKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGG 123

Query: 629 XXXATSLCFVYPLDFARTRLAADVGKGDGRREFSGLGNCISKIFKSDGLIGLYRGFGVSV 450
              ATSLCFVYPLDFARTRLAADVGK  G REF+GLGNC++KIFK+DG+ GLYRGFGVSV
Sbjct: 124 AAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSV 183

Query: 449 QGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQ 270
           QGIIIYRA+YFGFYDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQ
Sbjct: 184 QGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQ 243

Query: 269 SGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 99
           SGRAKS+ILYK+T+HCWATI KTEG +AFFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 244 SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 36.7 bits (81), Expect = 3e-04
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
 Frame = -1

Query: 539 REFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPD--PKNTP 366
           + + G+ +C  +I K  G +  +RG   +V      +A  F F D  + +      KNT 
Sbjct: 51  QRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQ 110

Query: 365 IVISWAIAQTVTTVAGIIS----YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTE 198
            +  +         AG  S    YP D  R R+    G+A  +  +    +C   I K +
Sbjct: 111 FLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKAD 170

Query: 197 GTSAFFKG 174
           G +  ++G
Sbjct: 171 GITGLYRG 178



 Score = 31.9 bits (69), Expect = 0.007
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -1

Query: 350 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFFK 177
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 176 GAFSNVLR 153
           G  +NV+R
Sbjct: 75  GNLANVIR 82


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  421 bits (1037), Expect = e-120
 Identities = 195/237 (82%), Positives = 210/237 (88%)
 Frame = -1

Query: 809 PKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXX 630
           PKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF        
Sbjct: 64  PKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGG 123

Query: 629 XXXATSLCFVYPLDFARTRLAADVGKGDGRREFSGLGNCISKIFKSDGLIGLYRGFGVSV 450
              ATSLCFVYPLDFARTRLAADVGK  G REF+GLGNC++KIFK+DG+ GLYRGFGVSV
Sbjct: 124 AAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSV 183

Query: 449 QGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQ 270
           QGIIIYRA+YFGFYDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQ
Sbjct: 184 QGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQ 243

Query: 269 SGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 99
           SGRAKS+ILYK+T+HCWATI KTEG +AFFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 244 SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 36.7 bits (81), Expect = 3e-04
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
 Frame = -1

Query: 539 REFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPD--PKNTP 366
           + + G+ +C  +I K  G +  +RG   +V      +A  F F D  + +      KNT 
Sbjct: 51  QRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQ 110

Query: 365 IVISWAIAQTVTTVAGIIS----YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTE 198
            +  +         AG  S    YP D  R R+    G+A  +  +    +C   I K +
Sbjct: 111 FLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKAD 170

Query: 197 GTSAFFKG 174
           G +  ++G
Sbjct: 171 GITGLYRG 178



 Score = 31.9 bits (69), Expect = 0.007
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -1

Query: 350 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFFK 177
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 176 GAFSNVLR 153
           G  +NV+R
Sbjct: 75  GNLANVIR 82


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 109 LISSYKTSTKAPPVPLRTLEKAPL 180
           L++++KT T+ P    + LEK P+
Sbjct: 134 LVNAFKTLTQEPKNTNKFLEKGPV 157


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 573 SCRRCR*GRWPA*ILRSRKLHQQDLQVRRSDRSVQRFRCVRAR 445
           SC R R   +     R  KLH +  ++     S +R+ C R R
Sbjct: 236 SCSRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSCSRER 278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,607
Number of Sequences: 438
Number of extensions: 4153
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)