Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11l21
         (826 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600...    29   3.4  
04_04_0479 - 25524753-25525426,25525736-25525819,25526255-255264...    29   3.4  

>06_03_1283 -
           28957729-28959258,28959354-28959550,28959824-28960026,
           28960097-28960424,28960524-28960661,28960765-28961020,
           28961529-28961626,28963104-28963367,28964395-28964584
          Length = 1067

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/67 (31%), Positives = 35/67 (52%)
 Frame = +1

Query: 346 KFFFALL*FCRPGNLSRLPLVNPLLYIFKREKRRTLEMPSRTPVVLNLSLHALPVKMQCH 525
           K +F +L  C P   S +PLV  LL   +  ++ T+ +PSRT +V++  + A+       
Sbjct: 10  KSYFDVLGICCP---SEVPLVEKLLQPLEGVQKVTVIVPSRTVIVVH-DVDAISQSQIVK 65

Query: 526 AINNPHL 546
           A+N   L
Sbjct: 66  ALNQARL 72


>04_04_0479 -
           25524753-25525426,25525736-25525819,25526255-25526483,
           25526910-25527357,25528462-25528569,25528681-25528806,
           25528887-25528981,25529062-25529147,25529253-25529408,
           25529523-25529766
          Length = 749

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 530 IAWHCILTGSACNDKLSTTGVRLGIS 453
           + W C +T  AC D+   +G RLG+S
Sbjct: 686 VPWLCNITLVACRDRAIASGARLGLS 711


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,373,568
Number of Sequences: 37544
Number of extensions: 245149
Number of successful extensions: 357
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)