Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11l21
(826 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 25 0.85
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 2.0
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 24 2.0
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 24 2.0
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 24 2.0
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 24 2.0
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 24 2.0
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 2.0
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 2.0
D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein. 23 4.5
AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase pro... 23 4.5
AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase pro... 23 4.5
AY217747-1|AAP45005.1| 246|Apis mellifera short-chain dehydroge... 22 6.0
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 25.0 bits (52), Expect = 0.85
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +2
Query: 440 REEH*KCRVERRLYSICHC 496
R E CR E +++CHC
Sbjct: 731 RSEQFLCRYEAHCFALCHC 749
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.8 bits (49), Expect = 2.0
Identities = 9/47 (19%), Positives = 22/47 (46%)
Frame = -1
Query: 280 IIQEIQFIHYLLNIILALLVKVNNQNDLINVFPWRFKIIIDFSIFWN 140
+ E + + I L ++ V+ +N ++ W +D+++ WN
Sbjct: 5 VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.8 bits (49), Expect = 2.0
Identities = 9/47 (19%), Positives = 22/47 (46%)
Frame = -1
Query: 280 IIQEIQFIHYLLNIILALLVKVNNQNDLINVFPWRFKIIIDFSIFWN 140
+ E + + I L ++ V+ +N ++ W +D+++ WN
Sbjct: 5 VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.8 bits (49), Expect = 2.0
Identities = 9/47 (19%), Positives = 22/47 (46%)
Frame = -1
Query: 280 IIQEIQFIHYLLNIILALLVKVNNQNDLINVFPWRFKIIIDFSIFWN 140
+ E + + I L ++ V+ +N ++ W +D+++ WN
Sbjct: 5 VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.8 bits (49), Expect = 2.0
Identities = 9/47 (19%), Positives = 22/47 (46%)
Frame = -1
Query: 280 IIQEIQFIHYLLNIILALLVKVNNQNDLINVFPWRFKIIIDFSIFWN 140
+ E + + I L ++ V+ +N ++ W +D+++ WN
Sbjct: 5 VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.8 bits (49), Expect = 2.0
Identities = 9/47 (19%), Positives = 22/47 (46%)
Frame = -1
Query: 280 IIQEIQFIHYLLNIILALLVKVNNQNDLINVFPWRFKIIIDFSIFWN 140
+ E + + I L ++ V+ +N ++ W +D+++ WN
Sbjct: 5 VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.8 bits (49), Expect = 2.0
Identities = 9/47 (19%), Positives = 22/47 (46%)
Frame = -1
Query: 280 IIQEIQFIHYLLNIILALLVKVNNQNDLINVFPWRFKIIIDFSIFWN 140
+ E + + I L ++ V+ +N ++ W +D+++ WN
Sbjct: 5 VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWN 51
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 2.0
Identities = 9/47 (19%), Positives = 22/47 (46%)
Frame = -1
Query: 280 IIQEIQFIHYLLNIILALLVKVNNQNDLINVFPWRFKIIIDFSIFWN 140
+ E + + I L ++ V+ +N ++ W +D+++ WN
Sbjct: 73 VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWN 119
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 2.0
Identities = 9/47 (19%), Positives = 22/47 (46%)
Frame = -1
Query: 280 IIQEIQFIHYLLNIILALLVKVNNQNDLINVFPWRFKIIIDFSIFWN 140
+ E + + I L ++ V+ +N ++ W +D+++ WN
Sbjct: 73 VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWN 119
>D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein.
Length = 567
Score = 22.6 bits (46), Expect = 4.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 18 YYLYSKNINKYLFCFSNNYKIWH*G 92
+ L KNI Y NNY IWH G
Sbjct: 132 FQLSLKNIEPY-----NNYYIWHPG 151
>AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase
protein.
Length = 567
Score = 22.6 bits (46), Expect = 4.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 18 YYLYSKNINKYLFCFSNNYKIWH*G 92
+ L KNI Y NNY IWH G
Sbjct: 132 FQLSLKNIEPY-----NNYYIWHPG 151
>AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase
protein.
Length = 580
Score = 22.6 bits (46), Expect = 4.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 428 NIYSSGFTKGSRDKFPGRQNYKS 360
N S+GF++ ++ P +NYKS
Sbjct: 430 NSTSAGFSQTNKTWLPVNENYKS 452
>AY217747-1|AAP45005.1| 246|Apis mellifera short-chain
dehydrogenase/reductase protein.
Length = 246
Score = 22.2 bits (45), Expect = 6.0
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -1
Query: 238 ILALLVKVNNQNDLINVFPW 179
++ L ++NQND++ V W
Sbjct: 58 LVPLQCDLSNQNDILKVIEW 77
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,570
Number of Sequences: 438
Number of extensions: 3920
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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