Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11l19
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       78   9e-16
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          27   2.1  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    27   2.1  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    26   3.7  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    25   8.5  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    25   8.5  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    25   8.5  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    25   8.5  

>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 77.8 bits (183), Expect = 9e-16
 Identities = 46/104 (44%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
 Frame = -1

Query: 377 KLIPELCNQFYHLGWVTGTGGGISIKQGDKIYIAPSGVQKERMKANDLFVQTIXXXXXXX 198
           +LI E+C   Y  GWVTGTG        D I IAPSGVQKERM+ + LFV ++       
Sbjct: 22  ELICEICRDLYTSGWVTGTG--------DAIVIAPSGVQKERMELHHLFVMSL-ITREYM 72

Query: 197 XXXXXXXXKSQCTPLFMLAY-RMRNAGAVIHTHSPHAVRCTLLY 69
                    SQCTPLF+  Y  +R+A A IHTHS  A+  + L+
Sbjct: 73  RMPALRLKPSQCTPLFLAVYTSLRDAYACIHTHSQEAILLSTLF 116


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 380 RKLIPELCNQFYHLGWVT-GTGGGISIK 300
           + LI EL   FY LGW+  G+G  I +K
Sbjct: 7   KNLILELIPHFYSLGWMKFGSGYAICVK 34


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 176 STFFPVVVILNLHH-QLFGQTDHWLSCV 256
           + F  V++ +NL H + FG+ + WLS V
Sbjct: 164 AVFLVVILAINLLHVKYFGEVEFWLSAV 191


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 182 FFPVVVILNLHHQLFGQTDHWLSC 253
           + P++V+ N H   F +TDH + C
Sbjct: 39  YVPLIVMKNAHDHGFLRTDHTIPC 62


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = +2

Query: 161 CIDFSSTFFPVVVILNLHHQLFGQTDHWLSCVPSELLKVQC 283
           C+ FS   FP   ++ L+  LF        C+   +   +C
Sbjct: 118 CLHFSKIIFPAQKVICLYIFLFALNQTLQECIEEYVFSSEC 158


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = +2

Query: 161 CIDFSSTFFPVVVILNLHHQLFGQTDHWLSCVPSELLKVQC 283
           C+ FS   FP   ++ L+  LF        C+   +   +C
Sbjct: 118 CLHFSKIIFPAQKVICLYIFLFALNQTLQECIEEYVFSSEC 158


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = +2

Query: 161 CIDFSSTFFPVVVILNLHHQLFGQTDHWLSCVPSELLKVQC 283
           C+ FS   FP   ++ L+  LF        C+   +   +C
Sbjct: 90  CLHFSKIIFPAQKVICLYIFLFALNQTLQECIEEYVFSSEC 130


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = +2

Query: 161 CIDFSSTFFPVVVILNLHHQLFGQTDHWLSCVPSELLKVQC 283
           C+ FS   FP   ++ L+  LF        C+   +   +C
Sbjct: 118 CLHFSKIIFPAQKVICLYIFLFALNQTLQECIEEYVFSSEC 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,887,637
Number of Sequences: 5004
Number of extensions: 35243
Number of successful extensions: 71
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)