Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11l19
         (503 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472...   101   4e-22
04_01_0419 + 5555264-5555808,5556582-5556903,5557011-5557271           31   0.53 
04_03_0811 - 19909128-19912214                                         28   4.9  
03_06_0701 - 35620559-35620777,35620872-35620949,35621038-356211...    28   4.9  
06_03_0124 - 16942492-16945032,16945478-16945572,16945966-169460...    27   6.5  
05_01_0601 + 5390484-5391692                                           27   8.6  
03_03_0135 + 14748712-14748718,14748807-14748873,14748962-147490...    27   8.6  

>11_04_0330 -
           16446685-16446776,16446968-16447119,16447172-16447281,
           16447518-16447619,16447705-16447854,16448195-16448350,
           16448552-16448713,16449549-16449638,16450152-16450271,
           16451323-16451418,16451502-16451638,16453400-16453622
          Length = 529

 Score =  101 bits (241), Expect = 4e-22
 Identities = 58/132 (43%), Positives = 72/132 (54%), Gaps = 14/132 (10%)
 Frame = -1

Query: 380 RKLIPELCNQFYHLGWVTGTGGGISIKQGDK--------IYIAPSGVQKERMKANDLFVQ 225
           R+L+ ELC  FY  GWVTGTGG I++K  D         I ++PSGVQKERM A D++V 
Sbjct: 30  RELVAELCRHFYGQGWVTGTGGSITVKANDPALPLADQLIVMSPSGVQKERMVAEDMYVL 89

Query: 224 T----IXXXXXXXXXXXXXXXKSQCTPLFMLAYRMRNAGAVIHTHSPHAVRCTLLYD--K 63
           +    +                + C PLFM AY MR AGAVIH+H       T+L    K
Sbjct: 90  SADGKVLSSPVSKPWPNKPPKCTDCAPLFMKAYLMRGAGAVIHSHGMETCIATMLDPGAK 149

Query: 62  VFEITHQEMIKG 27
            F +TH EMIKG
Sbjct: 150 EFRMTHMEMIKG 161


>04_01_0419 + 5555264-5555808,5556582-5556903,5557011-5557271
          Length = 375

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 200 ILNLHHQLFGQTDHWLSCVPSELLKVQCKFCHLVLLIYHHPCQSPIL 340
           + NL + LF      L   PS L  ++C    ++L  Y+ PC  P L
Sbjct: 192 VKNLGNTLFELLSEGLGLKPSYLTDIECNQGQIILCHYYPPCPQPEL 238


>04_03_0811 - 19909128-19912214
          Length = 1028

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 248  SCVPSELLKVQCKFCH-LVLLIYHHPCQSPILNGKIDCIIQELIS*DAPLM 397
            S +PS L  +   FC+ L  + Y HPC+ PI N ++  I+Q +   + PL+
Sbjct: 892  SALPS-LTTLDILFCYNLKTIFYQHPCEQPI-NYQLP-ILQRMRLQELPLL 939


>03_06_0701 -
           35620559-35620777,35620872-35620949,35621038-35621191,
           35621279-35621391,35621487-35621586,35622193-35622389,
           35622470-35622526,35622630-35622734,35622824-35622931,
           35623651-35623848,35624022-35624024
          Length = 443

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 257 PSELLKVQCKFCHLVLLIYHHPCQSPILNGKID 355
           PS+ + V  K C  ++L  H P QS +LN  ++
Sbjct: 251 PSKWIPVLRKICWYLVLAPHDPMQSSLLNATLE 283


>06_03_0124 -
           16942492-16945032,16945478-16945572,16945966-16946076,
           16946142-16946229
          Length = 944

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -3

Query: 399 IIRGAS*EINS*IMQSILPFRMGDWHGWWYINKTR*QNLHCTFRSSEGTHES 244
           + RGA  E N  + Q + P ++    GW  +   R +NL+C    + G   S
Sbjct: 79  VYRGAQ-ETNRKLYQELFPIQIMQMCGW-LLKVVRWENLNCVHMEAHGNRRS 128


>05_01_0601 + 5390484-5391692
          Length = 402

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 152 ITGCIDFSSTFFPVVVILNL-HHQLFGQTDHWLSCVPS-ELLKV 277
           +TGCI     F P + +L+L ++ L G     LSC+   E+L +
Sbjct: 241 LTGCIPEELGFLPTIEVLDLSYNSLSGHLPPTLSCLAGIEVLNI 284


>03_03_0135 +
           14748712-14748718,14748807-14748873,14748962-14749076,
           14749179-14749382,14749614-14749742,14749822-14749989,
           14750648-14750808,14751490-14751580,14752277-14752436,
           14752782-14752815,14753122-14753211,14754780-14754893,
           14755000-14755123,14755652-14755762,14756378-14756478,
           14756571-14756703
          Length = 602

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +2

Query: 209 LHHQLFGQTDHWLSCVPSELLKVQCKFCHLVLLIYHHPCQSPILNGKIDCIIQE 370
           L H   G T    +CVPS L +   +  HL+LL   + C S + +  ID  IQ+
Sbjct: 247 LRHWQCGHTTE--ACVPSALARRYQQDIHLLLLQQGYGCGSLMGSSDIDNWIQD 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,554,882
Number of Sequences: 37544
Number of extensions: 212570
Number of successful extensions: 486
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)