Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11l18
(843 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22181-10|CAA80187.1| 266|Caenorhabditis elegans Hypothetical p... 32 0.59
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 30 1.8
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 30 1.8
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 30 1.8
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 30 1.8
AF016668-6|AAB66090.1| 275|Caenorhabditis elegans Hypothetical ... 29 4.1
Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr... 29 5.5
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele... 29 5.5
Z67755-6|CAA91759.1| 311|Caenorhabditis elegans Hypothetical pr... 28 7.2
X78553-1|CAA55296.1| 543|Caenorhabditis elegans cytoplasmic int... 28 9.5
U49831-2|AAK68314.1| 526|Caenorhabditis elegans Intermediate fi... 28 9.5
U49831-1|AAA93405.1| 543|Caenorhabditis elegans Intermediate fi... 28 9.5
U29377-10|AAA68717.1| 140|Caenorhabditis elegans Hypothetical p... 28 9.5
>Z22181-10|CAA80187.1| 266|Caenorhabditis elegans Hypothetical
protein ZK632.12 protein.
Length = 266
Score = 31.9 bits (69), Expect = 0.59
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 3/127 (2%)
Frame = +2
Query: 419 LDRERARSCNPNTGVWLLAETETGFALLCSCLRPGLVTQLNMYEDCNVPV--GCAPHG-R 589
L+R ++ + VW+ + E ++C + LV + + +C V C+ R
Sbjct: 134 LERGNKQAATAHAAVWV-PDGEAVKCMVCGKTQFNLVQRRHHCRNCGRVVCGACSSRTFR 192
Query: 590 IDDINSASIRCVCDDGYVSDYNADTETPYCRPRTVRDVMHDESFFPRAPCADGQVRLDHP 769
ID+++ +R VCD + S +A P+T + H++S +G R +
Sbjct: 193 IDNVHKKPVR-VCDHCFDSLSSATPGQEESEPKTGNRLHHEDSSSDSEDEVNGSGRSSNE 251
Query: 770 GLNDFYR 790
FYR
Sbjct: 252 SRPTFYR 258
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 572 CAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYCRP 685
C PHG+ +I+ + +C C GY D N + C P
Sbjct: 2601 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKCLP 2637
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 572 CAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYCRP 685
C PHG+ +I+ + +C C GY D N + C P
Sbjct: 3185 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKCLP 3221
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 572 CAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYCRP 685
C PHG+ +I+ + +C C GY D N + C P
Sbjct: 2601 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKCLP 2637
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 572 CAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYCRP 685
C PHG+ +I+ + +C C GY D N + C P
Sbjct: 3185 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKCLP 3221
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 572 CAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYCRP 685
C PHG+ +I+ + +C C GY D N + C P
Sbjct: 3185 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKCLP 3221
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 365 DGQEQ-EKLIRAGEAYCLA-LDRERARSCNPNTGVWLLAETETGFALLCSC 511
+G+E E+ + AG+ YC +D R C G W L ET + C+C
Sbjct: 439 EGEEDAERGLVAGKCYCKTNVDGNRCDRCK--NGYWNLTETNVDGCVACTC 487
>AF016668-6|AAB66090.1| 275|Caenorhabditis elegans Hypothetical
protein F36H9.2 protein.
Length = 275
Score = 29.1 bits (62), Expect = 4.1
Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 6/119 (5%)
Frame = +2
Query: 503 CSCLRPGLVTQLNMYEDCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYCR 682
C R GLV+ + + CNV P D + +A C + +V D N +CR
Sbjct: 68 CQTNRKGLVSCVCSTDMCNVDTFSIP---TDIVLTAPPTIKCYNKFVDDDNF-CFGQFCR 123
Query: 683 ------PRTVRDVMHDESFFPRAPCADGQVRLDHPGLNDFYRRHFRLEDICVIDPCSVD 841
P DV SFFP C+D + D +N Y + C + C+ D
Sbjct: 124 YSRQLVPNDFGDVQIS-SFFPERGCSDLEYNHDLASMNVCYTNDEMIVCQCNTEFCNKD 181
>Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical
protein B0393.5 protein.
Length = 1106
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Frame = +2
Query: 611 SIRCVCDDGYVSDYNADTETPYCRPRTVRDVMHDESFFPRAPCADGQVRLDHPGLNDFYR 790
+ C+C DGY D P R V + + ++ P + C + Q + L F R
Sbjct: 469 TFECLCKDGYEGD-------PSSECRDVNECKNPDACGPNSQCTNTQGGYECECLAGFER 521
Query: 791 ----RHFRLEDICVIDPC 832
H D C ++PC
Sbjct: 522 IAEGAHCTDRDECAVEPC 539
>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 563 PVGCAPHGRIDDINSASIRCVCDDGYVSDY 652
P CA G + +N IRC C +G+ DY
Sbjct: 413 PTTCANGGTCEGVNGV-IRCNCPNGFSGDY 441
>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 563 PVGCAPHGRIDDINSASIRCVCDDGYVSDY 652
P CA G + +N IRC C +G+ DY
Sbjct: 413 PTTCANGGTCEGVNGV-IRCNCPNGFSGDY 441
>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein (
C.elegans glp-1 gene,complete cds. ).
Length = 1295
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 563 PVGCAPHGRIDDINSASIRCVCDDGYVSDY 652
P CA G + +N IRC C +G+ DY
Sbjct: 413 PTTCANGGTCEGVNGV-IRCNCPNGFSGDY 441
>Z67755-6|CAA91759.1| 311|Caenorhabditis elegans Hypothetical
protein F54F7.6 protein.
Length = 311
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 144 SIKFTYVYTIAIITRRNNSIIAKCILLIGECPSIFVRTRYFVV 16
++ FT + T ++ R N++ +CI+ + E P F + FVV
Sbjct: 48 TVVFTQLNTTNVVERLGNNLF-RCIVKVNELPRNFQHSHNFVV 89
>X78553-1|CAA55296.1| 543|Caenorhabditis elegans cytoplasmic
intermediate filamentprotein protein.
Length = 543
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 841 VHRTRVDHANVFESKVSAVKIIESRMIQTNLAVCARR 731
+ TRVD +F+SK+SAV ES ++ N A R+
Sbjct: 257 IQTTRVDLETIFQSKISAV---ESSIVSKNEAAVFRQ 290
>U49831-2|AAK68314.1| 526|Caenorhabditis elegans Intermediate
filament, b protein2, isoform c protein.
Length = 526
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 841 VHRTRVDHANVFESKVSAVKIIESRMIQTNLAVCARR 731
+ TRVD +F+SK+SAV ES ++ N A R+
Sbjct: 257 IQTTRVDLETIFQSKISAV---ESSIVSKNEAAVFRQ 290
>U49831-1|AAA93405.1| 543|Caenorhabditis elegans Intermediate
filament, b protein2, isoform a protein.
Length = 543
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 841 VHRTRVDHANVFESKVSAVKIIESRMIQTNLAVCARR 731
+ TRVD +F+SK+SAV ES ++ N A R+
Sbjct: 257 IQTTRVDLETIFQSKISAV---ESSIVSKNEAAVFRQ 290
>U29377-10|AAA68717.1| 140|Caenorhabditis elegans Hypothetical
protein K05F1.10 protein.
Length = 140
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 665 ETPYCRPRTVRDVMHDESFFPRAPCADGQVR 757
E + P + + H + +FPR C DG VR
Sbjct: 73 ENLFSPPHCLNHLHHAKCYFPRCVCNDGYVR 103
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,112,262
Number of Sequences: 27780
Number of extensions: 411336
Number of successful extensions: 1272
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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