Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11l17
(784 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 60 5e-10
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 56 8e-09
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 48 2e-06
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 46 5e-06
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 40 5e-04
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 39 7e-04
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 30 0.43
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 29 0.57
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 25 9.3
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 9.3
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c... 25 9.3
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 59.7 bits (138), Expect = 5e-10
Identities = 27/70 (38%), Positives = 39/70 (55%)
Frame = -1
Query: 784 IDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNG 605
+DF ATWCGPCK I PK ++ + IA+E +++MP+F KNG
Sbjct: 23 VDFFATWCGPCKAIAPKFEQF-SNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNG 81
Query: 604 KKLDEFSGAN 575
+K++E GAN
Sbjct: 82 EKIEEIVGAN 91
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 55.6 bits (128), Expect = 8e-09
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = -1
Query: 784 IDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXI-ASEYNINSMPTFVFVKN 608
+D A WCGPCK I P ++A++ AS + +MPTFVF +N
Sbjct: 24 VDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFEN 83
Query: 607 GKKLDEFSGAN 575
GK++D +GAN
Sbjct: 84 GKQIDMLTGAN 94
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 48.0 bits (109), Expect = 2e-06
Identities = 23/71 (32%), Positives = 37/71 (52%)
Frame = -1
Query: 784 IDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNG 605
+DF A WCGPCK + P L+++ +E IA + + ++PT V + G
Sbjct: 40 VDFYADWCGPCKYLKPFLEKL-SEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKG 98
Query: 604 KKLDEFSGANV 572
++LD GA+V
Sbjct: 99 QELDRIVGADV 109
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 46.4 bits (105), Expect = 5e-06
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -1
Query: 784 IDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXI-ASEYNINSMPTFVFVKN 608
+ F A WCG CK + P+ + A E+ SEY+I PT KN
Sbjct: 44 VKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTLNVFKN 103
Query: 607 GKKLDEFSG 581
GK++ ++SG
Sbjct: 104 GKQISQYSG 112
Score = 34.3 bits (75), Expect = 0.020
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = -1
Query: 784 IDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNG 605
++F A WCG CK + P +++A E S +I+ PT +F K
Sbjct: 378 VEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDIS-VSISGFPTIMFFKAN 436
Query: 604 KKLD 593
K++
Sbjct: 437 DKVN 440
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 39.5 bits (88), Expect = 5e-04
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = -1
Query: 784 IDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNG 605
++F A W PCK + D+ A + A +++N++P FV +
Sbjct: 25 LNFYAPWAAPCKQMNQVFDQFAKDTKNAVFLKIEAEKFSDI-AESFDVNAVPLFVLIHGA 83
Query: 604 KKLDEFSGAN 575
K L SGAN
Sbjct: 84 KVLARISGAN 93
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 39.1 bits (87), Expect = 7e-04
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = -1
Query: 784 IDFMATWCGPCKMIGPKLDEIAA--EMXXXXXXXXXXXXXXXXIASEYNINSMPTFV-FV 614
I+F ATWCG CK + P +E+ A E +A +Y+I PT + F
Sbjct: 44 IEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFP 103
Query: 613 KNGKKLDEFSGA 578
+G + ++S A
Sbjct: 104 PDGSEPVQYSNA 115
Score = 27.9 bits (59), Expect = 1.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 784 IDFMATWCGPCKMIGPKLDEI 722
++F A WCG CK + P + +
Sbjct: 163 VEFYADWCGYCKRLAPTYETL 183
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 29.9 bits (64), Expect = 0.43
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Frame = -1
Query: 778 FMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIA--SEYNINSMPTFVFVKNG 605
F A WCG CK + P ++A+ + A S+Y + PT V
Sbjct: 55 FYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNRAVCSQYQVQGFPTIKLVYPS 114
Query: 604 KKLDEFSGAN 575
K S +
Sbjct: 115 SKGSSLSSTD 124
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 29.5 bits (63), Expect = 0.57
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = -1
Query: 763 CGPCKMIGPKLD---EIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNGKKLD 593
CG CK +GP D E A E ++S NI ++PT +NG+ ++
Sbjct: 54 CGACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSKELSSCANIRAVPTLYLYQNGEIVE 113
Query: 592 E 590
E
Sbjct: 114 E 114
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 409 NIFKFITDVKNIFSSFIKNVYMFFFF*FHLVSIGGC 516
N ++TD +NIF +F+ N + F L I C
Sbjct: 76 NSIDYLTDTQNIFPNFVNNENNYQFSTAPLNPIDAC 111
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 464 FLINEEKMFLTSVMNLKILIFSVC-SLWNAKN 372
+ +N +K+ +S+ L LIF VC LW +++
Sbjct: 223 YQLNLDKVIHSSLKKLSFLIFKVCIRLWGSQS 254
>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 479 KNMYTFLINEEKMFLTSVMNLK 414
+N Y +L+NE+ FLTS+ +K
Sbjct: 262 RNHYIYLLNEQVDFLTSIEIMK 283
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,267
Number of Sequences: 5004
Number of extensions: 51933
Number of successful extensions: 111
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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