Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11l15
(373 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 66 1e-12
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 66 1e-12
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 30 0.13
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 0.23
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 29 0.23
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 29 0.31
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 28 0.41
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 27 1.2
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 26 1.6
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 1.6
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 26 2.2
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 26 2.2
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 25 2.9
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 25 2.9
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 25 3.8
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 25 3.8
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 25 3.8
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 25 3.8
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 22 4.0
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17... 25 5.0
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 25 5.0
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 25 5.0
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c... 25 5.0
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 25 5.0
SPAC8C9.10c |||ribosome biogenesis protein Rrp14-N|Schizosacchar... 24 6.7
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 6.7
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 24 6.7
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos... 24 6.7
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||... 24 6.7
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 24 6.7
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 24 6.7
SPAC630.06c |||conserved fungal protein|Schizosaccharomyces pomb... 24 8.8
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 24 8.8
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 24 8.8
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 24 8.8
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 24 8.8
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 66.5 bits (155), Expect = 1e-12
Identities = 28/44 (63%), Positives = 34/44 (77%)
Frame = -1
Query: 301 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQIEAIY 170
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL+ Q + Y
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKY 44
Score = 39.5 bits (88), Expect = 2e-04
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = -1
Query: 187 QIEAIYKKAHEAIRADPSHKK--KELKKDSVKQKRWNKRKLTLAERKNRIKQK 35
Q+E IY +A+ IR DPS +K K+ + ++ +RKLT ERK R K
Sbjct: 235 QLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEERKERFNAK 287
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 66.5 bits (155), Expect = 1e-12
Identities = 28/44 (63%), Positives = 34/44 (77%)
Frame = -1
Query: 301 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQIEAIY 170
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL+ Q + Y
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKY 44
Score = 37.9 bits (84), Expect = 5e-04
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -1
Query: 187 QIEAIYKKAHEAIRADPSHKK--KELKKDSVKQKRWNKRKLTLAERKNRIKQK 35
Q+E IY +A+ IR DPS +K K+ + + +RKLT ERK R K
Sbjct: 235 QLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQRKLTAEERKERFNAK 287
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 29.9 bits (64), Expect = 0.13
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = -1
Query: 190 VQIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKAS 26
+ IE KK+ + AD KKE K+ K+ + +KRK +E K+KK S
Sbjct: 449 IVIEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKS 503
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.1 bits (62), Expect = 0.23
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Frame = -1
Query: 274 KQYFKRYQVKFKRRREGK--TDYYARKRLVV--QIEAIYKKAHEAIRADPSHKKKELKKD 107
K+ K + + ++RRE + + A+K L Q EA K+ + ++ + K++EL++
Sbjct: 601 KKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELER- 659
Query: 106 SVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQ 2
QKR K+K E+K + +Q++A K + Q
Sbjct: 660 ---QKREEKQKQKEREKKLKKQQQEADREKMAREQ 691
Score = 25.8 bits (54), Expect = 2.2
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = -1
Query: 262 KRYQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWN 83
+ +Q+ R E + R+++ Q +A K E + +++ELKK K+K+ +
Sbjct: 542 RMFQIFAARLFEQRVLQAYREKVAQQRQA--KLLEEIEEENKRKQERELKKIREKEKKRD 599
Query: 82 KRK-LTLAERKNRIKQKKASFIKRLQAQ 2
K+K L LA+ + R ++++A + AQ
Sbjct: 600 KKKQLKLAKEEER-QRREAERLAEQAAQ 626
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 29.1 bits (62), Expect = 0.23
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 187 QIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKL-TLAERKNRIKQKKAS 26
+++ ++ E I PS K+K+ KK+ K+K KR +E + K+KK S
Sbjct: 442 EVDIDVEETVETISEKPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKKKKS 496
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 28.7 bits (61), Expect = 0.31
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = -1
Query: 169 KKAHEAIRADPSHKKKELKKDSVKQKRWNKR--KLTLAERKNRIKQKKASFIKRLQAQ 2
+ A E R + + + K LKK + ++KR K+ K AE K R+++++A + K++ +
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEK-RLQKERAKYAKQMSRE 764
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 28.3 bits (60), Expect = 0.41
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +2
Query: 131 VGWIRTDGFMGFLVDGFNLNNEAF--TSIIISFPFTTPLEFYLVPLEVLFVLHNFNESHI 304
VG I F+ FL F AF T + +SF F+T + + + LF H F+ S +
Sbjct: 453 VGIIAVLTFISFLDTSFATILAAFGTTLLSLSFVFSTSAQELMSSIIFLFSKHPFDISDV 512
Query: 305 L---NLSYKVAS 331
+ N+ Y+V S
Sbjct: 513 VIVNNIKYEVVS 524
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 1.2
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = -1
Query: 247 KFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVK----QKRWNK 80
+FK R E D LV E I + I + ++++ D+VK + R ++
Sbjct: 66 QFKEREE-HLDTLQTNGLVRLKETIRMDSQSEISSTMGLVGEKMELDAVKGRKVESRVDR 124
Query: 79 RKLTLAERKNRIKQKK 32
RKL AERK R K +K
Sbjct: 125 RKLEKAERKIRAKWEK 140
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 1.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 184 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRK 74
+E+ K EA + + +KKE KK+ K+K+ K K
Sbjct: 431 VESSEKDEDEAAKKEEKRRKKEAKKEK-KEKKEKKEK 466
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 1.6
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 181 EAIYKKAHEAIRADPSHKKKELKKDSVKQKR-WNKRKLTLAERKNRIKQKKASFIKR 14
EAI + EA RA +EL + QKR +R E K R +++ A ++R
Sbjct: 788 EAIREAEEEAARAAEEEANRELHEQEEAQKRAIEERTRAAREAKEREQREMAEKLER 844
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 25.8 bits (54), Expect = 2.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 186 RLKPSTRKPMKPSVRIHP 133
RL PS RKP+ V++HP
Sbjct: 383 RLLPSLRKPLLNFVKVHP 400
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 2.2
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -1
Query: 169 KKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 14
KK +E + SH+K K KRKL + +++ K+ +++ IK+
Sbjct: 27 KKRYEDEKRKISHQKYTDKLLEANDNETTKRKLLVKQKRKSNKEFQSNIIKK 78
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 2.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 124 KELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQ 2
KE+KK K KR T A + +Q+K +IK+++ +
Sbjct: 426 KEMKKKLKKSPPKRKRITTRASYDRQKEQRKKEYIKKVKKE 466
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.4 bits (53), Expect = 2.9
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 169 KKAHEAIRADPSHKKKE--LKKDSVKQKRWNKRKLTLAERKNRIKQKKA 29
KK E A S K+ E KKD+ + ++W+K T + + K+K A
Sbjct: 5 KKRAEKAEAAKSRKQDEEKKKKDAEEDEKWSKGVKTNKKEQEAEKRKAA 53
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.0 bits (52), Expect = 3.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 179 FNLNNEAFTSIIISFPFTTPLEFYLVPLEVLFV 277
+NLN ++ SI +SFP +F +VP+ FV
Sbjct: 540 YNLNVKSIESISLSFPKPCS-DFVVVPVHETFV 571
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 3.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -1
Query: 130 KKKELKKDSVKQKRWNKRK 74
KKK+ KK + K+K+ NKRK
Sbjct: 436 KKKKKKKKNNKKKKKNKRK 454
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.0 bits (52), Expect = 3.8
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 142 DPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 35
D KK + +K+ ++Q+R KRK L + ++K+K
Sbjct: 89 DNEAKKMKREKEILRQQR-QKRKSELTQLSQKVKEK 123
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 25.0 bits (52), Expect = 3.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 133 HKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKAS 26
HKKK+ + S K+K + K ++K ++K K S
Sbjct: 203 HKKKDKESSSKKRKSGSSDKEEKKKKKIKLKDKPES 238
Score = 23.8 bits (49), Expect = 8.8
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = -1
Query: 262 KRYQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWN 83
K++ K K +++ T + + +I KK H+ + S KK++ ++K+
Sbjct: 169 KKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKK 228
Query: 82 KRKL 71
K KL
Sbjct: 229 KIKL 232
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 22.2 bits (45), Expect(2) = 4.0
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -1
Query: 175 IYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNR 47
I+K+ E +R ++E+KK + K++ T +E K +
Sbjct: 114 IFKRRSEVVRGADEPTEEEIKKGEAADEN-EKKEPTSSESKKQ 155
Score = 21.0 bits (42), Expect(2) = 4.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 274 KQYFKRYQVKFKRRRE 227
K Y K+Y FKRR E
Sbjct: 105 KAYAKKYAPIFKRRSE 120
>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 268
Score = 24.6 bits (51), Expect = 5.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 145 ADPSHKKKELKKDSVKQKRWNKRKLTLAERKN 50
+DP + KK SV +K W +R+ TL +++
Sbjct: 76 SDPLPAEFYFKKGSVGEKDWQERQKTLKGKES 107
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 24.6 bits (51), Expect = 5.0
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = -1
Query: 181 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKN 50
E I + + H++K+ ++ V++K KRK +R+N
Sbjct: 510 ETITRSGIAISSTEMDHQQKQARRRRVRRKHAEKRKQMAEKRRN 553
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 24.6 bits (51), Expect = 5.0
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 169 KKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQ 38
KK H A + P +KK+LKK S N + +A +Q
Sbjct: 4 KKGHYAKHSGPKAEKKKLKKVSDGSASNNPKAFAVASAGRMARQ 47
>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 135
Score = 24.6 bits (51), Expect = 5.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 262 KRYQVKFKRRREGKTDYYARKRLVVQIEAIYKK 164
K + K KR++E K + K V++ A+YKK
Sbjct: 86 KGNKTKKKRKKEKKKETIVEKNKVLKSFALYKK 118
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 24.6 bits (51), Expect = 5.0
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -1
Query: 160 HEAIRADPSHKKKELKKDSVKQKRWNKRK 74
HE RA +KKE + ++V++KR NK++
Sbjct: 332 HEQSRALKEKRKKE-QDENVRRKRENKKR 359
>SPAC8C9.10c |||ribosome biogenesis protein
Rrp14-N|Schizosaccharomyces pombe|chr 1|||Manual
Length = 154
Score = 24.2 bits (50), Expect = 6.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 91 RWNKRKLTLAERKNRIKQK 35
+W ++K TL E+K R K K
Sbjct: 35 QWKQKKSTLEEKKERRKMK 53
>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 167
Score = 24.2 bits (50), Expect = 6.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 148 RADPSHKKKELKKDSVKQKRWNKRK 74
R +KKE KK+ K+K+ +RK
Sbjct: 139 RLKEQREKKEQKKEQKKEKKTERRK 163
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.2 bits (50), Expect = 6.7
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 131 QEERVKERLGQTEALEQTQANIGREEKQNQAKEGFLHQE 15
+EER K+ L + E E+ + + E+K + ++ L QE
Sbjct: 133 EEERRKKELMEKEKKEKERIRLIEEQKHKENEQRRLKQE 171
>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 584
Score = 24.2 bits (50), Expect = 6.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 142 DPSHKKKELKKDSVKQKRWNKRKLTLAER 56
DPS K K K + ++W + LT A R
Sbjct: 18 DPSKKYKPFKGIQLPNRQWPNKVLTKAPR 46
>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 295
Score = 24.2 bits (50), Expect = 6.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 99 LTESFFNSFFLWDGSARMASWA 164
LT+S+ + FL+ GSA+M WA
Sbjct: 248 LTKSWASWIFLFVGSAQMFVWA 269
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 24.2 bits (50), Expect = 6.7
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 181 EAIYK--KAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTL 65
E IY+ + HE P +KK+ K+ S K+K+ + T+
Sbjct: 48 EVIYELPEVHEKKDKKPEKRKKDQKEASEKKKKGKRTSPTI 88
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 24.2 bits (50), Expect = 6.7
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = -1
Query: 124 KELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 14
++L K S+++K K+K + A ++ + +KKA +++
Sbjct: 166 EQLLKKSIRRKEKEKKKSSDAWKERKDNEKKAMLMRQ 202
>SPAC630.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 188
Score = 23.8 bits (49), Expect = 8.8
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = -1
Query: 169 KKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQ 38
KK R PS KK+ ++ +++K ++ +A ++NR ++
Sbjct: 135 KKEESKHRRRPS-KKRRIRMKLLREKEEQLKRQAMAAKRNRFRK 177
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 23.8 bits (49), Expect = 8.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 220 TDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 92
T Y K+ ++E + KKA A PS+ E D +K++
Sbjct: 60 TPEYIEKQRQKKLEKMAKKAARKPIAPPSNAPPEFNTDFIKRE 102
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 23.8 bits (49), Expect = 8.8
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -1
Query: 202 KRLVVQIEAIYKKAHEAIRADPSHKKKE-LKKDSVKQKRWNKRKLTLAERKNRIKQK 35
KR + I ++KK H ++ PS K++ + D + +NKR L++ + K K
Sbjct: 594 KRGLGTITTVHKK-HGSVDHLPSVKRRRSIANDFHGKPDYNKRSLSIERKPEAFKTK 649
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 23.8 bits (49), Expect = 8.8
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -1
Query: 148 RADPSHKKKELKKDSVKQKRWNKRKLTLA--ERKNRIKQ 38
RA + ++K +K K+ + KRK + E+K ++KQ
Sbjct: 478 RAKETPEEKRARKKKTKEDKAEKRKSKIPKYEKKRKLKQ 516
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 23.8 bits (49), Expect = 8.8
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Frame = -1
Query: 187 QIEAIYKKAHEAIRADPSHKKKELKKDSVKQ-------KRWNKRKLTLAERKNRIKQKKA 29
++E+I K A ++ DP+ KEL S K KR K+ T R + +KK
Sbjct: 24 ELESILKDAKKSCLKDPTTSMKELVACSEKTQQVFDDLKRTEKKFHTSLNRFGKTLEKKF 83
Query: 28 SF 23
+F
Sbjct: 84 NF 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,507,560
Number of Sequences: 5004
Number of extensions: 27965
Number of successful extensions: 165
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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