Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11l13
(781 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 240 2e-64
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 201 8e-53
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 180 2e-46
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 176 3e-45
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 150 2e-37
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 122 6e-29
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 109 4e-25
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 88 2e-18
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 62 1e-10
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 29 0.99
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 27 3.0
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch... 27 3.0
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 27 4.0
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 27 4.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.0
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 26 5.3
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 7.0
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 26 7.0
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 7.0
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 26 7.0
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 240 bits (587), Expect = 2e-64
Identities = 110/155 (70%), Positives = 122/155 (78%)
Frame = -1
Query: 781 VTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTN 602
V + PLG+IV +L DV PKT NFRALCTGEKG+GY GS FHRVIP FMLQGGDFT
Sbjct: 8 VIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGGDFTR 67
Query: 601 HNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVF 422
NGTGGKSIYG KF DENF LKH PG+LSMANAG +TNGSQFFITTV T WLDG+HVVF
Sbjct: 68 GNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVF 127
Query: 421 GNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQI 317
G V EGM+VVK++E+ GS SG T RIVI CG +
Sbjct: 128 GEVTEGMDVVKKVESLGSNSGATRARIVIDKCGTV 162
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 201 bits (491), Expect = 8e-53
Identities = 91/129 (70%), Positives = 104/129 (80%)
Frame = -1
Query: 769 DAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGT 590
D LG++ I L PKT ENFRAL TGEKGFGY+GSIFHRVIPNFM+QGGD T +GT
Sbjct: 37 DEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVIPNFMIQGGDITKGDGT 96
Query: 589 GGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVV 410
GGKSIYG++F DENF L H PG+LSMANAG D+NGSQFFITTVKT WLDG HVVFG V+
Sbjct: 97 GGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVL 156
Query: 409 EGMEVVKQI 383
G ++VK+I
Sbjct: 157 SGYDIVKKI 165
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 180 bits (438), Expect = 2e-46
Identities = 89/157 (56%), Positives = 109/157 (69%), Gaps = 4/157 (2%)
Frame = -1
Query: 781 VTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFG----YKGSIFHRVIPNFMLQGG 614
+++D I EL +V PKT +NF +LC G + G YKGS FHRVI NFMLQGG
Sbjct: 9 ISIDGKIQPTIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFMLQGG 68
Query: 613 DFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGR 434
DFT NGTGG+SIYG KFEDENF LKH P +LSMANAG +TNGSQFFITTV T LDG+
Sbjct: 69 DFTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGK 128
Query: 433 HVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCG 323
HVVFG V++G V+ IE +++ +VI++CG
Sbjct: 129 HVVFGKVIQGKSTVRTIENLETKNDDPVVPVVIEECG 165
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 176 bits (428), Expect = 3e-45
Identities = 85/163 (52%), Positives = 111/163 (68%), Gaps = 8/163 (4%)
Frame = -1
Query: 781 VTVDDAPLGKIVIELRSDVTPKTCENFRALCTGE------KGFGYKGSIFHRVIPNFMLQ 620
+ +D LG+I I L S + PKT ENFR CTGE K GYK S FHR+I FM+Q
Sbjct: 11 IAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRIIQGFMIQ 70
Query: 619 GGDFTNHNGTGGKSIYGNK-FEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWL 443
GGDF + +GTG +I+ ++ F DENFTLKH PG+LSMANAG D+NG QFFITTV +L
Sbjct: 71 GGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFL 130
Query: 442 DGRHVVFGNVVEGMEVVKQIE-TFGSQSGKTSKRIVIKDCGQI 317
DG+HVVFG V+EG ++VK+IE T + + + I +CG++
Sbjct: 131 DGKHVVFGEVIEGYDIVKEIESTPVGANSRPKSNVAIVECGEM 173
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 150 bits (364), Expect = 2e-37
Identities = 74/127 (58%), Positives = 94/127 (74%), Gaps = 1/127 (0%)
Frame = -1
Query: 760 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGK 581
LGKI+IEL ++ PKTC+NF L ++G+ Y G IFHRVIP+F++QGGD T G GG
Sbjct: 10 LGKILIELYTEHAPKTCQNFYTLA--KEGY-YDGVIFHRVIPDFVIQGGDPTG-TGRGGT 65
Query: 580 SIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEG 404
SIYG+KF+DE + L HTG G+LSMANAG +TN SQFFIT T WLDG+H +FG VV G
Sbjct: 66 SIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRVVSG 125
Query: 403 MEVVKQI 383
+ V K++
Sbjct: 126 LSVCKRM 132
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 122 bits (294), Expect = 6e-29
Identities = 64/127 (50%), Positives = 83/127 (65%), Gaps = 1/127 (0%)
Frame = -1
Query: 757 GKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKS 578
G I I+L + PK +NF E G+ Y +IFHR+I NFM+QGGD +GTGG+S
Sbjct: 464 GDISIKLYPEEAPKAVQNFTT--HAENGY-YDNTIFHRIIKNFMIQGGDPLG-DGTGGES 519
Query: 577 IYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGM 401
I+ FEDE + LKH P +SMAN+G +TNGSQFFITT T WLDG+H +F G+
Sbjct: 520 IWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFARAYAGL 579
Query: 400 EVVKQIE 380
+VV +IE
Sbjct: 580 DVVHRIE 586
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 109 bits (262), Expect = 4e-25
Identities = 61/138 (44%), Positives = 82/138 (59%), Gaps = 1/138 (0%)
Frame = -1
Query: 757 GKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKS 578
G+I IEL +D P NF L ++G+ Y+ +IFHR I FM+QGGD + G GG+S
Sbjct: 285 GEINIELHTDYAPHAVYNFVQLA--KQGY-YRNTIFHRNIARFMIQGGD-PSGTGRGGQS 340
Query: 577 IYGNKFEDENFT-LKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGM 401
I+G F+DE LKH G++SMAN G +TNGSQFFI LD +H +FG VV G+
Sbjct: 341 IWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTIFGRVVGGL 400
Query: 400 EVVKQIETFGSQSGKTSK 347
V+ +E + S K
Sbjct: 401 NVLDALEKVPTNSNDHPK 418
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 87.8 bits (208), Expect = 2e-18
Identities = 52/117 (44%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Frame = -1
Query: 757 GKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKS 578
G I IEL PK C NF LC +G+ Y G+I HRV+P F++QGGD T G GG+S
Sbjct: 22 GDIQIELWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFLIQGGDPTG-TGMGGES 77
Query: 577 IYGNKFEDENF-TLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVV 410
IYG F E L+ G++ MA + N SQFFIT T +G+ +FG VV
Sbjct: 78 IYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLGPTPEWNGKQTLFGRVV 134
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 61.7 bits (143), Expect = 1e-10
Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 16/162 (9%)
Frame = -1
Query: 769 DAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGT 590
+ +G +VI+L PKTCENF LC K Y F+ + N+ Q GD G
Sbjct: 6 ETTVGDLVIDLFVKEAPKTCENFLKLC---KLKYYNFCPFYNIQHNYTCQTGDPLGPTGD 62
Query: 589 GGKSIY-----GNKFEDENF--TLKHTGPGVLSMANAGADTN-------GSQFFIT-TVK 455
GG+ ++ G +F F +L H G++SM+ A + GSQF IT +
Sbjct: 63 GGRCVWNVLNKGTRFFKAEFNPSLVHNKMGLVSMSTATISSRDDKLLVCGSQFIITLSDN 122
Query: 454 TSWLDGRHVVFGNVVEGMEVVKQI-ETFGSQSGKTSKRIVIK 332
LD R+ ++G V EG + + +I + + G+ + I IK
Sbjct: 123 LEGLDERYPIYGQVAEGFDTLLKINDAICDEEGQPYRDIRIK 164
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 28.7 bits (61), Expect = 0.99
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = -2
Query: 666 TRAPFSIVSSPISCCKEGTSPTITALGESPSTAISLKTRISPLSTQDLASS 514
+RA S++S I KE +P+ITA SP +A S + ISP + + +S
Sbjct: 321 SRAAASLLS--ILDSKEKNTPSITAKAGSPQSAPSKASYISPYARPGITTS 369
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 781 VTVDDAPLGKIVIELRSDVTPKTCENFRALCT 686
V D+ P+GKI+I R D+ N C+
Sbjct: 19 VATDNIPIGKIIIRKRVDILSLDSANLTRTCS 50
>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 357 FPDWLPKVSICLTTSMPSTTFPKTTCLPS 443
FP WL K S CL +P T+ P T + S
Sbjct: 302 FP-WLKKNSFCLYLPIPLTSIPSTPSIRS 329
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 26.6 bits (56), Expect = 4.0
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3
Query: 485 WFPVLHHHC 459
WFP +HHHC
Sbjct: 97 WFPEVHHHC 105
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +2
Query: 323 TTVFDNDSLRGLPRLAAKGLNLLDNFHAFNNIPKDNMSAIQPGGLDSGDEELG 481
T VFD + +L+ ++++DN +IPK+ A S + +G
Sbjct: 525 TVVFDKTGTLTVGKLSVTDISIVDNLEELLDIPKNIFWAFVKASESSSEHPIG 577
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -2
Query: 705 TSVPCALARKASVTRAPFSIVSSPISCCKEGTSPTITALGESPSTAISLKTRISPLST 532
TS C + S+ S +S+PI+ TS + T++ P++ S T SPL T
Sbjct: 225 TSTSCTTS--TSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
Score = 26.2 bits (55), Expect = 5.3
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -2
Query: 705 TSVPCALARKASVTRAPFSIVSSPISCCKEGTSPTITALGESPSTAISLKTRISPLST 532
TS C + T S+ S+PI+ TS + T++ P++ S T SPL T
Sbjct: 168 TSTSCTTSTSIPPTGGSSSL-STPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 390 LTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCL 539
LT +P TTF T +P + +V ++++ PL+ + P PV L
Sbjct: 37 LTEQLP-TTFRITASIPHATQVRDYFIEHYYPLIENARTEDAKIPLPVSL 85
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 7.0
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = -2
Query: 729 TSLQRRVKTSVPCALARKASVTRAPFSIVSSPISCCKEGTSPTITALGESPSTAISLKTR 550
TSL +S+P + + A+ T S+ SS + S + + L S +TAIS +
Sbjct: 12 TSLSSSASSSIPASSSSAAAST----SLSSSSVI-----PSSSSSMLSSSSATAISSSSS 62
Query: 549 ISPLSTQDLAS 517
SPLS+ S
Sbjct: 63 SSPLSSSSFTS 73
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -1
Query: 613 DFTNHNGTGGKSIYGNKFEDEN-FTLKHTGPGVLSMANAGADTNGSQFFI 467
D + T KS+YG +D+N F + T V+ ADT Q F+
Sbjct: 11 DLEKYPSTATKSVYGQSKDDKNVFDIHPTESEVIPGEVEYADTPSHQNFL 60
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -2
Query: 126 VCSLLHFCY-YIFISTSSLAVCLDLNNSHYRRPLFISTYYA 7
VC +H + YI++ SS A LDL + L S YA
Sbjct: 51 VCCFIHNVFPYIYVEYSSFAETLDLEVPDFLSQLQTSINYA 91
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.8 bits (54), Expect = 7.0
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +3
Query: 372 PKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCLRVKF 551
P S + +S +++ T+ P+S EV T P+ S+ A + E + G V
Sbjct: 162 PASSTEVASSYSASSTEVTSSYPASSEVATSTSSYVAPVSSSVASSSEISAGSATSYVPT 221
Query: 552 SSSNL 566
SSS++
Sbjct: 222 SSSSI 226
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,304,565
Number of Sequences: 5004
Number of extensions: 72917
Number of successful extensions: 225
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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