Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11l12
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    28   1.5  
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    28   1.5  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    27   2.6  
SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae Q0...    27   3.4  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    26   4.5  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    25   7.8  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   7.8  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -1

Query: 642 PTQVHLRPG-HVPDH*EEDDPLREAN--EEVRGSEATEERLAARGRDLHRGPQD 490
           P  +H  PG H+P    +   L E    E  RG E  E     + ++ H+GP+D
Sbjct: 326 PPPMHHEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKGPKDKEHHKGPKD 379


>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +3

Query: 90  RHRLPRRQRVTRHHWFKKTAPFEAEFKSF----TTNYKM 194
           RH +   +   R+HW   T   +A+ KSF    TT+Y++
Sbjct: 260 RHHIKVLRDTLRNHWVSTTRDLKADIKSFLSMATTDYQL 298


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -2

Query: 647 VYRPKSTCDLDMSRTTKKKMTRYEKQMKKFVDQKRLKSGSRRAVEISIE 501
           V R  S  D+D     K++     K +  F  QK  K  + +  ++SIE
Sbjct: 374 VSRANSVIDVDAYPPEKRRRKEQSKLLSFFAKQKEEKEETNKTEDVSIE 422


>SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae
           Q0080|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 48

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 389 SFDILLFTIMNYIESVYLV 445
           SF  L+FT++ YI SVY++
Sbjct: 14  SFGFLIFTVLLYISSVYVL 32


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 105 RRQRVTRHHWFKKTAPFEAEFKSFTTNY 188
           RR+R+  H W KK     AEF +  TNY
Sbjct: 586 RRKRLDVHPWVKKIDTLAAEFPAH-TNY 612


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -1

Query: 384 CSKQTLRTWPGG 349
           CS++++R WPGG
Sbjct: 193 CSEESVRAWPGG 204


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 24  GERPLRSLAERARRHARDVTRARHRLP 104
           GE+ +R+LA   R H +   RA +R P
Sbjct: 7   GEKYIRNLASYIRSHEKRFARAPYRAP 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,034
Number of Sequences: 5004
Number of extensions: 47969
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)