Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11l12
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1007 - 29637911-29638333,29640095-29640282,29640688-296407...    29   2.6  
12_02_0309 - 17342900-17342904,17343860-17343887,17344003-173441...    28   8.0  
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788...    28   8.0  
06_01_0486 - 3455030-3455770                                           28   8.0  
04_04_1305 - 32493704-32493799,32493897-32494265                       28   8.0  

>03_05_1007 -
           29637911-29638333,29640095-29640282,29640688-29640773,
           29641108-29641173,29641289-29641331,29641398-29642328
          Length = 578

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 688 WRARGFRSPPPRDTCTDPSPPA 623
           W    F +PPP +T   PSPP+
Sbjct: 76  WGVANFLAPPPGETSPSPSPPS 97


>12_02_0309 -
           17342900-17342904,17343860-17343887,17344003-17344122,
           17344252-17344413,17344655-17344865,17344980-17345016,
           17345965-17346016
          Length = 204

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 339 VLYTMLKCIVTVLISTGKIQCVVLTLYIVTY 247
           + Y ++K    +LI+     CV+ T+YIV Y
Sbjct: 61  IFYALIKSNEALLITINAAGCVIETIYIVMY 91


>09_06_0048 + 20477076-20478547,20478643-20478722,20478880-20478893,
            20480164-20481199,20481275-20481402,20481673-20481732,
            20481774-20481878,20481971-20482055,20482315-20482470,
            20482562-20482831,20482877-20483671,20483844-20483903,
            20484062-20485134
          Length = 1777

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 597  EEDDPLREANEEVRGSEATEERLAARGRDLH-RGPQDGAV 481
            + D  L + N+   G +A+ ER+ + G DL   G Q G V
Sbjct: 1373 QSDGRLADGNDSKLGEDASRERMRSSGEDLGLSGAQPGGV 1412


>06_01_0486 - 3455030-3455770
          Length = 246

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = -3

Query: 667 SPPPRDTCTDPSPPATWTCP 608
           SPPP      PSPPAT TCP
Sbjct: 143 SPPPY--VPPPSPPATKTCP 160


>04_04_1305 - 32493704-32493799,32493897-32494265
          Length = 154

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 588 DPLREANEEVRGSEATEERLAARGRDLHRG-PQDGAVSRQPH 466
           DP +E  E+++ SEAT    AAR R    G P++G+     H
Sbjct: 111 DPSQEGEEDMKSSEATTRVRAARLRPKPPGNPREGSGGNGGH 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,196,182
Number of Sequences: 37544
Number of extensions: 342763
Number of successful extensions: 1289
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)