Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11l12
(690 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT022280-1|AAY54696.1| 361|Drosophila melanogaster IP11380p pro... 95 8e-20
AE014298-2361|AAF48587.2| 355|Drosophila melanogaster CG9915-PA... 95 8e-20
AE014297-1607|AAF54886.2| 373|Drosophila melanogaster CG7488-PA... 33 0.37
BT023783-1|AAZ41792.1| 1072|Drosophila melanogaster LD13709p pro... 31 1.5
BT001505-1|AAN71260.1| 624|Drosophila melanogaster LD35838p pro... 31 1.5
AY071601-1|AAL49223.1| 1140|Drosophila melanogaster RE65203p pro... 31 1.5
AE014297-92|AAN13317.2| 742|Drosophila melanogaster CG9805-PB, ... 31 1.5
AE014297-91|AAF52126.1| 1140|Drosophila melanogaster CG9805-PA, ... 31 1.5
AE014297-1125|AAF54511.2| 3111|Drosophila melanogaster CG3996-PA... 30 3.4
AE014297-2725|AAG22156.2| 980|Drosophila melanogaster CG4733-PA... 29 4.5
AF221715-1|AAF34661.1| 5554|Drosophila melanogaster split ends l... 29 7.9
AF188205-1|AAF13218.1| 5533|Drosophila melanogaster Spen RNP mot... 29 7.9
AF184612-1|AAF26299.1| 5476|Drosophila melanogaster split ends p... 29 7.9
AE014134-58|AAN10511.1| 5476|Drosophila melanogaster CG18497-PC,... 29 7.9
AE014134-57|AAF51534.2| 5533|Drosophila melanogaster CG18497-PB,... 29 7.9
AE014134-56|AAF51535.2| 5560|Drosophila melanogaster CG18497-PA,... 29 7.9
>BT022280-1|AAY54696.1| 361|Drosophila melanogaster IP11380p
protein.
Length = 361
Score = 95.1 bits (226), Expect = 8e-20
Identities = 48/69 (69%), Positives = 55/69 (79%)
Frame = -2
Query: 689 VARARXPQPSTKGYVYRPKSTCDLDMSRTTKKKMTRYEKQMKKFVDQKRLKSGSRRAVEI 510
VARAR P PS K YV RPKST + ++S +TK+K RYEK MK+F+D KRLK SRRAVEI
Sbjct: 294 VARARVPMPSNKDYVIRPKSTVEGEVSASTKRKPNRYEKHMKRFLDSKRLKE-SRRAVEI 352
Query: 509 SIEGRKMAL 483
SIEGRKMAL
Sbjct: 353 SIEGRKMAL 361
>AE014298-2361|AAF48587.2| 355|Drosophila melanogaster CG9915-PA
protein.
Length = 355
Score = 95.1 bits (226), Expect = 8e-20
Identities = 48/69 (69%), Positives = 55/69 (79%)
Frame = -2
Query: 689 VARARXPQPSTKGYVYRPKSTCDLDMSRTTKKKMTRYEKQMKKFVDQKRLKSGSRRAVEI 510
VARAR P PS K YV RPKST + ++S +TK+K RYEK MK+F+D KRLK SRRAVEI
Sbjct: 288 VARARVPMPSNKDYVIRPKSTVEGEVSASTKRKPNRYEKHMKRFLDSKRLKE-SRRAVEI 346
Query: 509 SIEGRKMAL 483
SIEGRKMAL
Sbjct: 347 SIEGRKMAL 355
>AE014297-1607|AAF54886.2| 373|Drosophila melanogaster CG7488-PA
protein.
Length = 373
Score = 33.1 bits (72), Expect = 0.37
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +2
Query: 275 THCIFPVEIKTVT--IHFN-IV*STTRPPPGHVRSVCLLQRSFDILLFTIMNYIESVYL 442
TH +F V ++++T H N V TTRPPP R+ QRS I + + N +S ++
Sbjct: 18 THNLFLVNVRSLTGAAHTNDAVAPTTRPPPAESRNPGEEQRSLHIAVIGVPNVGKSTFI 76
>BT023783-1|AAZ41792.1| 1072|Drosophila melanogaster LD13709p
protein.
Length = 1072
Score = 31.1 bits (67), Expect = 1.5
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = -1
Query: 597 EEDDPLREANEEVRGSEATEERLAARGRDLHRGPQD 490
+E++ LR+ EE+R ++A EER AA R L R +D
Sbjct: 745 KEEERLRK-EEEIRLAQAAEERAAAEARRLEREAED 779
>BT001505-1|AAN71260.1| 624|Drosophila melanogaster LD35838p
protein.
Length = 624
Score = 31.1 bits (67), Expect = 1.5
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = -1
Query: 597 EEDDPLREANEEVRGSEATEERLAARGRDLHRGPQD 490
+E++ LR+ EE+R ++A EER AA R L R +D
Sbjct: 297 KEEERLRK-EEEIRLAQAAEERAAAEARRLEREAED 331
>AY071601-1|AAL49223.1| 1140|Drosophila melanogaster RE65203p
protein.
Length = 1140
Score = 31.1 bits (67), Expect = 1.5
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = -1
Query: 597 EEDDPLREANEEVRGSEATEERLAARGRDLHRGPQD 490
+E++ LR+ EE+R ++A EER AA R L R +D
Sbjct: 813 KEEERLRK-EEEIRLAQAAEERAAAEARRLEREAED 847
>AE014297-92|AAN13317.2| 742|Drosophila melanogaster CG9805-PB,
isoform B protein.
Length = 742
Score = 31.1 bits (67), Expect = 1.5
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = -1
Query: 597 EEDDPLREANEEVRGSEATEERLAARGRDLHRGPQD 490
+E++ LR+ EE+R ++A EER AA R L R +D
Sbjct: 415 KEEERLRK-EEEIRLAQAAEERAAAEARRLEREAED 449
>AE014297-91|AAF52126.1| 1140|Drosophila melanogaster CG9805-PA,
isoform A protein.
Length = 1140
Score = 31.1 bits (67), Expect = 1.5
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = -1
Query: 597 EEDDPLREANEEVRGSEATEERLAARGRDLHRGPQD 490
+E++ LR+ EE+R ++A EER AA R L R +D
Sbjct: 813 KEEERLRK-EEEIRLAQAAEERAAAEARRLEREAED 847
>AE014297-1125|AAF54511.2| 3111|Drosophila melanogaster CG3996-PA
protein.
Length = 3111
Score = 29.9 bits (64), Expect = 3.4
Identities = 24/66 (36%), Positives = 36/66 (54%)
Frame = -2
Query: 632 STCDLDMSRTTKKKMTRYEKQMKKFVDQKRLKSGSRRAVEISIEGRKMAL*AASPIHVIA 453
S CD D ++T+K + K +K +QK+L +GSR E S+E ++ A S H I
Sbjct: 633 SLCDDDDPKSTEKSPKQKAKLARKLKEQKQL-AGSR---ETSLERQRPKSWAPSS-HEIP 687
Query: 452 CALLGT 435
L+GT
Sbjct: 688 FMLMGT 693
>AE014297-2725|AAG22156.2| 980|Drosophila melanogaster CG4733-PA
protein.
Length = 980
Score = 29.5 bits (63), Expect = 4.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 12 ISSAGERPLRSLAERARRHARDVTRARHRLPRRQ 113
+S++ E P L RAR H R+V+ RLP+ Q
Sbjct: 442 VSTSSESPHPWLRGRARAHVREVSGCAARLPQHQ 475
>AF221715-1|AAF34661.1| 5554|Drosophila melanogaster split ends long
isoform protein.
Length = 5554
Score = 28.7 bits (61), Expect = 7.9
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = -2
Query: 641 RPKSTCDLDMSRTTKKKMTRYEKQMKKFVDQK----RLKSGSRRAVEISIEGR 495
R K D D+ ++ + EK++ + DQ+ R K SRRA+++ EGR
Sbjct: 2015 REKELRDKDLREKEMREKEQREKELHREKDQREREHREKEQSRRAMDVEQEGR 2067
>AF188205-1|AAF13218.1| 5533|Drosophila melanogaster Spen RNP motif
protein long isoformprotein.
Length = 5533
Score = 28.7 bits (61), Expect = 7.9
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = -2
Query: 641 RPKSTCDLDMSRTTKKKMTRYEKQMKKFVDQK----RLKSGSRRAVEISIEGR 495
R K D D+ ++ + EK++ + DQ+ R K SRRA+++ EGR
Sbjct: 2021 REKELRDKDLREKEMREKEQREKELHREKDQREREHREKEQSRRAMDVEQEGR 2073
>AF184612-1|AAF26299.1| 5476|Drosophila melanogaster split ends
protein.
Length = 5476
Score = 28.7 bits (61), Expect = 7.9
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = -2
Query: 641 RPKSTCDLDMSRTTKKKMTRYEKQMKKFVDQK----RLKSGSRRAVEISIEGR 495
R K D D+ ++ + EK++ + DQ+ R K SRRA+++ EGR
Sbjct: 1964 REKELRDKDLREKEMREKEQREKELHREKDQREREHREKEQSRRAMDVEQEGR 2016
>AE014134-58|AAN10511.1| 5476|Drosophila melanogaster CG18497-PC,
isoform C protein.
Length = 5476
Score = 28.7 bits (61), Expect = 7.9
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = -2
Query: 641 RPKSTCDLDMSRTTKKKMTRYEKQMKKFVDQK----RLKSGSRRAVEISIEGR 495
R K D D+ ++ + EK++ + DQ+ R K SRRA+++ EGR
Sbjct: 1964 REKELRDKDLREKEMREKEQREKELHREKDQREREHREKEQSRRAMDVEQEGR 2016
>AE014134-57|AAF51534.2| 5533|Drosophila melanogaster CG18497-PB,
isoform B protein.
Length = 5533
Score = 28.7 bits (61), Expect = 7.9
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = -2
Query: 641 RPKSTCDLDMSRTTKKKMTRYEKQMKKFVDQK----RLKSGSRRAVEISIEGR 495
R K D D+ ++ + EK++ + DQ+ R K SRRA+++ EGR
Sbjct: 2021 REKELRDKDLREKEMREKEQREKELHREKDQREREHREKEQSRRAMDVEQEGR 2073
>AE014134-56|AAF51535.2| 5560|Drosophila melanogaster CG18497-PA,
isoform A protein.
Length = 5560
Score = 28.7 bits (61), Expect = 7.9
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = -2
Query: 641 RPKSTCDLDMSRTTKKKMTRYEKQMKKFVDQK----RLKSGSRRAVEISIEGR 495
R K D D+ ++ + EK++ + DQ+ R K SRRA+++ EGR
Sbjct: 2021 REKELRDKDLREKEMREKEQREKELHREKDQREREHREKEQSRRAMDVEQEGR 2073
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,415,343
Number of Sequences: 53049
Number of extensions: 574027
Number of successful extensions: 1849
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1846
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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