Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11l10
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2...    27   2.0  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   3.5  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   8.2  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   8.2  

>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 123 YGGESESALHATVLSPSPHRYTI 191
           Y G+ E  L   VL P+PHR+ +
Sbjct: 56  YLGKKEDELDEVVLRPNPHRFVL 78


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 290 P*VQPISMRGFDPTPHPPL 234
           P   P+  R FDP P PP+
Sbjct: 149 PVTPPVHSRSFDPLPKPPV 167


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 121 NMGERANPHSTLQSSPPLP 177
           NM  ++ P+ST  SSPP P
Sbjct: 693 NMRAKSTPNSTSFSSPPTP 711


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 354 SL*PHAXYPFGGSPVWGP 301
           SL P    PFGGSPV  P
Sbjct: 271 SLNPSTPSPFGGSPVMHP 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,842,074
Number of Sequences: 5004
Number of extensions: 35812
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)