Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11l10
(491 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982 33 0.16
06_03_1191 + 28286685-28287008,28287149-28287211,28287377-282874... 31 0.38
10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998 30 0.88
05_06_0230 + 26585439-26586608 30 1.2
08_02_1329 - 26182762-26183007,26183149-26183249,26183533-261836... 29 1.5
03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105 28 3.5
02_05_1000 + 33417357-33417600,33417692-33417744,33418376-334184... 28 3.5
11_06_0630 + 25649767-25649921,25650136-25650286 28 4.7
10_08_0302 - 16626622-16626624,16626809-16628761,16631452-16631655 28 4.7
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 28 4.7
05_04_0011 + 17139322-17139451,17139552-17140174 28 4.7
05_01_0535 - 4610339-4610707,4611910-4613049,4613342-4613419 28 4.7
02_05_1066 + 33852402-33852815,33852936-33853019,33853203-338534... 28 4.7
02_05_0107 + 25897487-25898059 28 4.7
10_06_0129 + 11052606-11053211 27 6.2
08_02_0363 + 16238710-16240224,16240537-16240545 27 6.2
06_02_0339 + 14761074-14761421 27 6.2
05_05_0334 + 24156532-24156565,24156681-24156782,24157145-241572... 27 6.2
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 27 6.2
02_05_0319 - 27872601-27874457 27 6.2
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927 27 8.2
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859... 27 8.2
05_01_0530 - 4567481-4569043 27 8.2
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 27 8.2
>01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982
Length = 301
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 223 TPHPKGGWGVGSKPLMEIGCTYGVQPRSPYGG 318
TP P GG+G GS G YG P +P GG
Sbjct: 123 TPSPGGGYGGGSPAPSHGGGAYGSSPSTPSGG 154
>06_03_1191 +
28286685-28287008,28287149-28287211,28287377-28287461,
28287561-28287623,28287954-28288029,28288190-28288223,
28289553-28289659,28289738-28289807,28289852-28289950
Length = 306
Score = 31.5 bits (68), Expect = 0.38
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 345 PHAXYPFGGSPVWGPRLHPVGAAYFHEGL*PHPPPPFG-MGCSYPLQSSPL 196
PH+ Y P P + A+Y H PHPPPP +G Y + PL
Sbjct: 12 PHSSYAAPPPPPPPPPGTSLYASYRHHAYPPHPPPPPAYVGAYYDHAAEPL 62
>10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998
Length = 473
Score = 30.3 bits (65), Expect = 0.88
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 135 SESALHATVLSPSPHRYTILIGGRTVAGKNTPSQRGVGGGVKAPHGNRLHLRGA 296
S + LH +S + + ++ G A +PS R GGGV+AP + + A
Sbjct: 85 SSTKLHLEDISDTLYTRPSVLAGAASATTRSPSSRRGGGGVRAPPATTVTVHSA 138
>05_06_0230 + 26585439-26586608
Length = 389
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 254 PTPHPPLGWGVLTRYSPPPYQYCITMG 174
P P PPL W +L R PP C+ G
Sbjct: 18 PAPSPPLPWLLLPRADGPPTFSCVLSG 44
>08_02_1329 -
26182762-26183007,26183149-26183249,26183533-26183602,
26183692-26183895,26186435-26186941,26188672-26188677
Length = 377
Score = 29.5 bits (63), Expect = 1.5
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 126 GGESESALHATVLSPSP-HRYTILIGGRTVAGKNTPSQRGVGGGVKAPHGN 275
GG S S H+ SPSP H Y+ G + G + R GGG AP GN
Sbjct: 122 GGSSYSVEHSP--SPSPLHPYSDS-GSGSYGGGLVANSRAKGGGGGAPRGN 169
>03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105
Length = 430
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = -2
Query: 397 RGGXXSAPLGXEFHQPLAPRLLPXWRVPRMGTAAAPRRCSLFP 269
RGG P G EF P+ P W G + P C L P
Sbjct: 101 RGGGAGVPAGGEFPPSAHPQHYPGW----PGVSGRPHPCGLQP 139
>02_05_1000 +
33417357-33417600,33417692-33417744,33418376-33418413,
33418720-33419114,33420092-33420221,33420512-33421343
Length = 563
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 303 PRLHPVGAAYFHEGL*PHPPPPFGMGCSYPLQSSPLS 193
P++HP+ AA H P PPPP SY SSP S
Sbjct: 127 PQMHPLTAAAKHAITIPPPPPP-AAAASY--TSSPSS 160
>11_06_0630 + 25649767-25649921,25650136-25650286
Length = 101
Score = 27.9 bits (59), Expect = 4.7
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = -2
Query: 457 GXYXYPRRSFGDKAPXRL*GRGGXXSAPLGXEFHQPLAPRLLPXWR--VPRMGTA 299
G + YP R D + R G P F P+ RLLP WR PR GTA
Sbjct: 2 GQHNYPTRILIDSS-GRQSGVSDKVRGPPAA-FTHPVGMRLLPTWRDYSPRKGTA 54
>10_08_0302 - 16626622-16626624,16626809-16628761,16631452-16631655
Length = 719
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 227 PIPKGGGGWGQSPSWK*AAPTGCSRG 304
P+P+GGGG G P + P+ G
Sbjct: 374 PVPRGGGGGGDQPDYAVLVPSSLLPG 399
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -3
Query: 345 PHAXYPFGGSPVWGPRLHPVGAAYFHEGL*PHPPPPFG 232
PH P GG P P ++P G + H PPP G
Sbjct: 9 PHPPPPQGGFPPQPPPMNPYGPPPPQQPAYGHMPPPQG 46
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -3
Query: 345 PHAX-YPFGGSPVWGPRLHPVGAAYFHEGL*PHPPPPFGMGCSYPLQSSP 199
PH + FG P + P Y+ P PPPP+G+ S P P
Sbjct: 65 PHQPQFNFGPGPPQQQQPPPPPQMYYQP---PPPPPPYGVNSSQPPPPPP 111
>05_04_0011 + 17139322-17139451,17139552-17140174
Length = 250
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -3
Query: 330 PFGGSPVW-GPRLHPVGAAYFHEGL*PHPPPP 238
P GG+ + G RL P G H P PPPP
Sbjct: 77 PNGGNVIGNGKRLTPTGPDPIHNEFQPPPPPP 108
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -3
Query: 330 PFGGSPVW-GPRLHPVGAAYFHEGL*PHPPPP 238
P GG+ + G RL P G H P PPPP
Sbjct: 145 PNGGNVIGDGKRLTPTGPDPIHNEFQPPPPPP 176
>05_01_0535 - 4610339-4610707,4611910-4613049,4613342-4613419
Length = 528
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 233 PKGGGGWGQSPSWK*AAPTGCSRGPHTGDPP 325
PK GGG G SP+ A + S+G G+PP
Sbjct: 51 PKSGGGGGGSPT----AKSPLSKGAGNGEPP 77
>02_05_1066 +
33852402-33852815,33852936-33853019,33853203-33853454,
33853643-33853708,33854784-33854849,33854935-33855003,
33855829-33856165,33856438-33856541
Length = 463
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = -3
Query: 285 GAAYFHEGL*PHPPPPFGMGCSYPLQS 205
GAA H G PPPFG G S P QS
Sbjct: 149 GAAGMH-GAAAMQPPPFGQGGSMPAQS 174
>02_05_0107 + 25897487-25898059
Length = 190
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 242 PPLGWGVLTRYSPPPYQYCITMGRGGEDCSVECGFALS 129
P L G + + PPP Q + RGGE ++ G +L+
Sbjct: 49 PLLAAGSVKKQPPPPQQQIVVHQRGGEKAVLKWGRSLA 86
>10_06_0129 + 11052606-11053211
Length = 201
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 397 RGGXXSAPLGXEFHQPLAPRLLPXWRVPRMGTAAAPRR 284
RGG + + QP A R P WR R+G PRR
Sbjct: 24 RGGSATTDVDVRQLQPTATRQ-PTWRRQRLGRRRQPRR 60
>08_02_0363 + 16238710-16240224,16240537-16240545
Length = 507
Score = 27.5 bits (58), Expect = 6.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 241 GWGVGSKPLMEIGCTY 288
GW V KPL+E+ C+Y
Sbjct: 137 GWSVTGKPLVEVFCSY 152
>06_02_0339 + 14761074-14761421
Length = 115
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +3
Query: 126 GGESESALHATVLSPSPHRYTILIGGRTVAGKNTPSQRGVGGG 254
GG S +HA + R + GGR V G P+ G GGG
Sbjct: 24 GGASSPTMHAAAV----WRRRSISGGRRVLGGRRPAVLGSGGG 62
>05_05_0334 + 24156532-24156565,24156681-24156782,24157145-24157274,
24157361-24157445,24157525-24157666,24157762-24157894,
24157993-24158254,24158331-24158519,24158596-24158721,
24158809-24159195,24159288-24159398,24159629-24160423,
24161114-24161255,24161350-24162518,24162609-24162818,
24163010-24163478,24164037-24164464
Length = 1637
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 239 GGGGWGQSPSWK*AAPTGCSRGPHTGDPPXG*XAWG 346
GGGGWG +P AP G G G WG
Sbjct: 1592 GGGGWGAAPGGSNDAP-GWGSGKKAVPAQDGGSGWG 1626
>03_06_0030 +
31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 255 PHPPPPFGMGCSYPLQSSPLSILY 184
P PP G S+P+Q+ P+SI Y
Sbjct: 152 PSQLPPNGAKMSWPIQTPPMSITY 175
>02_05_0319 - 27872601-27874457
Length = 618
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +1
Query: 238 GGWGVGSKPLMEIGCTYGVQPRSPYGGPAKXVXGV 342
GG+GVGS L QPRS G A GV
Sbjct: 16 GGYGVGSAALQAAARQQSQQPRSDGAGGAGVTGGV 50
>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
Length = 229
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 210 VAGKNTPSQRGVGGGVKAPHGNRLHLRGAAAVPI 311
+ G+ TP VG G +AP + + +GAAAV I
Sbjct: 145 LVGERTPPPPLVGSGGRAPPQSLVRGKGAAAVAI 178
>11_06_0561 -
24984960-24985205,24985283-24985354,24985906-24985977,
24986612-24986782,24987464-24987653,24987733-24987976,
24988162-24988474,24988687-24989517,24989628-24989672,
24989677-24989790,24989877-24990371,24990627-24990824,
24990902-24991357
Length = 1148
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 236 KGGGGWGQSPSWK*AAPTGCSRGPHTGDPP 325
+GGGG G +AP G + P G PP
Sbjct: 71 QGGGGGGPVSGGGGSAPGGAATAPRQGAPP 100
>05_01_0530 - 4567481-4569043
Length = 520
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/19 (52%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = +1
Query: 31 SCTPWSAGTARAV-TPKLI 84
SC+PW+AG AR + P+L+
Sbjct: 127 SCSPWTAGVARRLGVPRLV 145
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = -1
Query: 317 PPYGDRGCTP*VQPISMRGFDP-TPHPPLGWGVLTRYSPPP 198
PP G P + P + G P P PPL G PPP
Sbjct: 284 PPNAPMGMPPRIPPPPVGGTQPPPPPPPLANGPPRSIPPPP 324
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,606,486
Number of Sequences: 37544
Number of extensions: 405665
Number of successful extensions: 1430
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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