Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11l10
(491 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX511262-1|CAI95572.1| 2157|Homo sapiens HLA-B associated transc... 33 0.54
BC060668-1|AAH60668.1| 2157|Homo sapiens HLA-B associated transc... 33 0.54
BC042295-1|AAH42295.1| 2157|Homo sapiens BAT2 protein protein. 33 0.54
BA000025-31|BAB63391.1| 2157|Homo sapiens BAT2 protein. 33 0.54
AL805934-4|CAI18500.1| 2157|Homo sapiens HLA-B associated transc... 33 0.54
AL662847-63|CAI17698.2| 2157|Homo sapiens HLA-B associated trans... 33 0.54
AL662801-47|CAI18313.1| 2157|Homo sapiens HLA-B associated trans... 33 0.54
AF129756-17|AAD18086.1| 2157|Homo sapiens BAT2 protein. 33 0.54
BC021165-1|AAH21165.1| 609|Homo sapiens ZNF503 protein protein. 32 0.94
BC013011-1|AAH13011.1| 609|Homo sapiens ZNF503 protein protein. 32 0.94
BC011625-1|AAH11625.1| 646|Homo sapiens zinc finger protein 503... 32 0.94
BC007494-1|AAH07494.1| 283|Homo sapiens ZNF503 protein protein. 32 0.94
D89501-1|BAA13971.1| 134|Homo sapiens PBI protein. 31 1.6
BC112025-1|AAI12026.1| 347|Homo sapiens nodal homolog (mouse) p... 31 1.6
BC104976-1|AAI04977.1| 347|Homo sapiens mouse nodal homolog pre... 31 1.6
BC033585-1|AAH33585.1| 325|Homo sapiens NODAL protein protein. 31 1.6
AB067632-1|BAB62524.1| 347|Homo sapiens nodal-related protein p... 31 1.6
X55720-1|CAA39252.1| 783|Homo sapiens granulocyte colony stimul... 30 3.8
M81930-1|AAB59443.1| 233|Homo sapiens prion protein protein. 30 5.0
M13899-1|AAA60182.1| 253|Homo sapiens prion protein protein. 30 5.0
M13667-1|AAA19664.1| 245|Homo sapiens PRNP protein. 30 5.0
EF139172-1|ABL75508.1| 253|Homo sapiens prion protein protein. 30 5.0
D00015-1|BAA00011.1| 245|Homo sapiens prion protein protein. 30 5.0
DQ408531-1|ABD63004.1| 253|Homo sapiens prion protein PrP protein. 30 5.0
CR542072-1|CAG46869.1| 253|Homo sapiens PRNP protein. 30 5.0
CR542039-1|CAG46836.1| 253|Homo sapiens PRNP protein. 30 5.0
BT019496-1|AAV38303.1| 253|Homo sapiens prion protein (p27-30) ... 30 5.0
BC022532-1|AAH22532.1| 253|Homo sapiens prion protein (p27-30) ... 30 5.0
BC012844-1|AAH12844.1| 253|Homo sapiens prion protein (p27-30) ... 30 5.0
AY569456-1|AAS80162.1| 253|Homo sapiens prion protein protein. 30 5.0
AY458651-1|AAR21603.1| 277|Homo sapiens prion protein protein. 30 5.0
AY219883-1|AAO83636.1| 246|Homo sapiens prion protein protein. 30 5.0
AY008282-1|AAG21693.1| 253|Homo sapiens prion protein protein. 30 5.0
AL133396-4|CAB75503.1| 253|Homo sapiens prion protein (p27-30) ... 30 5.0
AL133396-3|CAM27320.1| 249|Homo sapiens prion protein (p27-30) ... 30 5.0
AL133396-2|CAI19053.1| 217|Homo sapiens prion protein (p27-30) ... 30 5.0
AF085477-1|AAC62750.2| 285|Homo sapiens prion protein precursor... 30 5.0
AF076976-1|AAD46098.1| 253|Homo sapiens prion protein protein. 30 5.0
AF030575-1|AAC05365.1| 246|Homo sapiens prion protein variant p... 30 5.0
S83341-1|AAB50777.1| 81|Homo sapiens prion protein protein. 29 6.6
S80539-1|AAB21334.1| 97|Homo sapiens PrP amyloid protein. 29 6.6
S79978-1|AAB35416.1| 89|Homo sapiens prion protein protein. 29 6.6
X83416-1|CAA58442.1| 245|Homo sapiens prion protein protein. 29 8.8
U29185-1|AAC78725.1| 245|Homo sapiens prion protein protein. 29 8.8
U17986-1|AAA86990.1| 732|Homo sapiens GABA/noradrenaline transp... 29 8.8
M81929-1|AAB59442.1| 224|Homo sapiens prion protein protein. 29 8.8
AY219882-1|AAO83635.1| 238|Homo sapiens prion protein protein. 29 8.8
AL360169-1|CAI16559.1| 1543|Homo sapiens RP3-442A17.1 protein. 29 8.8
AL353800-1|CAI20993.1| 1543|Homo sapiens RP3-442A17.1 protein. 29 8.8
AF219946-1|AAF87975.1| 1544|Homo sapiens tubby super-family prot... 29 8.8
>BX511262-1|CAI95572.1| 2157|Homo sapiens HLA-B associated transcript
2 protein.
Length = 2157
Score = 33.1 bits (72), Expect = 0.54
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 165 SPSPHRYTILIGGRTVAGKNTPSQRGVGGGVKAP 266
SP+P R+T GGR + PS+RG GGG P
Sbjct: 1147 SPAPARFTAR-GGRVFTPRGVPSRRGRGGGRPPP 1179
>BC060668-1|AAH60668.1| 2157|Homo sapiens HLA-B associated transcript
2 protein.
Length = 2157
Score = 33.1 bits (72), Expect = 0.54
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 165 SPSPHRYTILIGGRTVAGKNTPSQRGVGGGVKAP 266
SP+P R+T GGR + PS+RG GGG P
Sbjct: 1147 SPAPARFTAR-GGRVFTPRGVPSRRGRGGGRPPP 1179
>BC042295-1|AAH42295.1| 2157|Homo sapiens BAT2 protein protein.
Length = 2157
Score = 33.1 bits (72), Expect = 0.54
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 165 SPSPHRYTILIGGRTVAGKNTPSQRGVGGGVKAP 266
SP+P R+T GGR + PS+RG GGG P
Sbjct: 1147 SPAPARFTAR-GGRVFTPRGVPSRRGRGGGRPPP 1179
>BA000025-31|BAB63391.1| 2157|Homo sapiens BAT2 protein.
Length = 2157
Score = 33.1 bits (72), Expect = 0.54
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 165 SPSPHRYTILIGGRTVAGKNTPSQRGVGGGVKAP 266
SP+P R+T GGR + PS+RG GGG P
Sbjct: 1147 SPAPARFTAR-GGRVFTPRGVPSRRGRGGGRPPP 1179
>AL805934-4|CAI18500.1| 2157|Homo sapiens HLA-B associated transcript
2 protein.
Length = 2157
Score = 33.1 bits (72), Expect = 0.54
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 165 SPSPHRYTILIGGRTVAGKNTPSQRGVGGGVKAP 266
SP+P R+T GGR + PS+RG GGG P
Sbjct: 1147 SPAPARFTAR-GGRVFTPRGVPSRRGRGGGRPPP 1179
>AL662847-63|CAI17698.2| 2157|Homo sapiens HLA-B associated transcript
2 protein.
Length = 2157
Score = 33.1 bits (72), Expect = 0.54
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 165 SPSPHRYTILIGGRTVAGKNTPSQRGVGGGVKAP 266
SP+P R+T GGR + PS+RG GGG P
Sbjct: 1147 SPAPARFTAR-GGRVFTPRGVPSRRGRGGGRPPP 1179
>AL662801-47|CAI18313.1| 2157|Homo sapiens HLA-B associated transcript
2 protein.
Length = 2157
Score = 33.1 bits (72), Expect = 0.54
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 165 SPSPHRYTILIGGRTVAGKNTPSQRGVGGGVKAP 266
SP+P R+T GGR + PS+RG GGG P
Sbjct: 1147 SPAPARFTAR-GGRVFTPRGVPSRRGRGGGRPPP 1179
>AF129756-17|AAD18086.1| 2157|Homo sapiens BAT2 protein.
Length = 2157
Score = 33.1 bits (72), Expect = 0.54
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 165 SPSPHRYTILIGGRTVAGKNTPSQRGVGGGVKAP 266
SP+P R+T GGR + PS+RG GGG P
Sbjct: 1147 SPAPARFTAR-GGRVFTPRGVPSRRGRGGGRPPP 1179
>BC021165-1|AAH21165.1| 609|Homo sapiens ZNF503 protein protein.
Length = 609
Score = 32.3 bits (70), Expect = 0.94
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 239 GGGGWGQSPSWK*AAPTGCSRGPHTGDPPXG 331
GGGG G P+W +A +G S GP G P G
Sbjct: 22 GGGGGGADPAWT-SALSGNSSGPGPGSSPAG 51
>BC013011-1|AAH13011.1| 609|Homo sapiens ZNF503 protein protein.
Length = 609
Score = 32.3 bits (70), Expect = 0.94
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 239 GGGGWGQSPSWK*AAPTGCSRGPHTGDPPXG 331
GGGG G P+W +A +G S GP G P G
Sbjct: 22 GGGGGGADPAWT-SALSGNSSGPGPGSSPAG 51
>BC011625-1|AAH11625.1| 646|Homo sapiens zinc finger protein 503
protein.
Length = 646
Score = 32.3 bits (70), Expect = 0.94
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 239 GGGGWGQSPSWK*AAPTGCSRGPHTGDPPXG 331
GGGG G P+W +A +G S GP G P G
Sbjct: 22 GGGGGGADPAWT-SALSGNSSGPGPGSSPAG 51
>BC007494-1|AAH07494.1| 283|Homo sapiens ZNF503 protein protein.
Length = 283
Score = 32.3 bits (70), Expect = 0.94
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 239 GGGGWGQSPSWK*AAPTGCSRGPHTGDPPXG 331
GGGG G P+W +A +G S GP G P G
Sbjct: 22 GGGGGGADPAWT-SALSGNSSGPGPGSSPAG 51
>D89501-1|BAA13971.1| 134|Homo sapiens PBI protein.
Length = 134
Score = 31.5 bits (68), Expect = 1.6
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -1
Query: 317 PPYGDRGCTP*VQPISMRG-FDPTPHPPLGWGVLTRYS-PPPY 195
PPYG P + P G P+P PP G G + +S PPPY
Sbjct: 56 PPYGPGRFPPPLSPPYGPGRIPPSPPPPYGPGRIQSHSLPPPY 98
>BC112025-1|AAI12026.1| 347|Homo sapiens nodal homolog (mouse)
protein.
Length = 347
Score = 31.5 bits (68), Expect = 1.6
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -3
Query: 318 SPVWGPRLHPVGAAYFHEGL*PHPPPPFGMGCSYPLQSSPLSILYND 178
+PV G HP AY L + P C P+++ PLS+LY D
Sbjct: 282 NPV-GEEFHPTNHAYIQSLLKRYQPHRVPSTCCAPVKTKPLSMLYVD 327
>BC104976-1|AAI04977.1| 347|Homo sapiens mouse nodal homolog
precursor protein.
Length = 347
Score = 31.5 bits (68), Expect = 1.6
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -3
Query: 318 SPVWGPRLHPVGAAYFHEGL*PHPPPPFGMGCSYPLQSSPLSILYND 178
+PV G HP AY L + P C P+++ PLS+LY D
Sbjct: 282 NPV-GEEFHPTNHAYIQSLLKRYQPHRVPSTCCAPVKTKPLSMLYVD 327
>BC033585-1|AAH33585.1| 325|Homo sapiens NODAL protein protein.
Length = 325
Score = 31.5 bits (68), Expect = 1.6
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -3
Query: 318 SPVWGPRLHPVGAAYFHEGL*PHPPPPFGMGCSYPLQSSPLSILYND 178
+PV G HP AY L + P C P+++ PLS+LY D
Sbjct: 260 NPV-GEEFHPTNHAYIQSLLKRYQPHRVPSTCCAPVKTKPLSMLYVD 305
>AB067632-1|BAB62524.1| 347|Homo sapiens nodal-related protein
protein.
Length = 347
Score = 31.5 bits (68), Expect = 1.6
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -3
Query: 318 SPVWGPRLHPVGAAYFHEGL*PHPPPPFGMGCSYPLQSSPLSILYND 178
+PV G HP AY L + P C P+++ PLS+LY D
Sbjct: 282 NPV-GEEFHPTNHAYIQSLLKRYQPHRVPSTCCAPVKTKPLSMLYVD 327
>X55720-1|CAA39252.1| 783|Homo sapiens granulocyte colony
stimulating factor receptor D-7 protein.
Length = 783
Score = 30.3 bits (65), Expect = 3.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 291 PVGAAYFHEGL*PHPPPPFGMGCSYPLQS 205
P +AYF + + HP PP G+ C +P+ S
Sbjct: 753 PRRSAYFKDQIMLHPAPPNGLLCLFPITS 781
>M81930-1|AAB59443.1| 233|Homo sapiens prion protein protein.
Length = 233
Score = 29.9 bits (64), Expect = 5.0
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
G+ G P+GGGGWGQ P G G PH G P G WG
Sbjct: 33 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 83
>M13899-1|AAA60182.1| 253|Homo sapiens prion protein protein.
Length = 253
Score = 29.9 bits (64), Expect = 5.0
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
G+ G P+GGGGWGQ P G G PH G P G WG
Sbjct: 40 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 90
>M13667-1|AAA19664.1| 245|Homo sapiens PRNP protein.
Length = 245
Score = 29.9 bits (64), Expect = 5.0
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
G+ G P+GGGGWGQ P G G PH G P G WG
Sbjct: 33 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 83
>EF139172-1|ABL75508.1| 253|Homo sapiens prion protein protein.
Length = 253
Score = 29.9 bits (64), Expect = 5.0
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
G+ G P+GGGGWGQ P G G PH G P G WG
Sbjct: 40 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 90
>D00015-1|BAA00011.1| 245|Homo sapiens prion protein protein.
Length = 245
Score = 29.9 bits (64), Expect = 5.0
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
G+ G P+GGGGWGQ P G G PH G P G WG
Sbjct: 33 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 83
>DQ408531-1|ABD63004.1| 253|Homo sapiens prion protein PrP protein.
Length = 253
Score = 29.9 bits (64), Expect = 5.0
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
G+ G P+GGGGWGQ P G G PH G P G WG
Sbjct: 40 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 90
>CR542072-1|CAG46869.1| 253|Homo sapiens PRNP protein.
Length = 253
Score = 29.9 bits (64), Expect = 5.0
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
G+ G P+GGGGWGQ P G G PH G P G WG
Sbjct: 40 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 90
>CR542039-1|CAG46836.1| 253|Homo sapiens PRNP protein.
Length = 253
Score = 29.9 bits (64), Expect = 5.0
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
G+ G P+GGGGWGQ P G G PH G P G WG
Sbjct: 40 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 90
>BT019496-1|AAV38303.1| 253|Homo sapiens prion protein (p27-30)
(Creutzfeld-Jakob disease, Gerstmann-Strausler-Scheinker
protein.
Length = 253
Score = 29.9 bits (64), Expect = 5.0
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
G+ G P+GGGGWGQ P G G PH G P G WG
Sbjct: 40 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 90
>BC022532-1|AAH22532.1| 253|Homo sapiens prion protein (p27-30)
(Creutzfeldt-Jakob disease, Gerstmann-Strausler-Scheinke
protein.
Length = 253
Score = 29.9 bits (64), Expect = 5.0
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
G+ G P+GGGGWGQ P G G PH G P G WG
Sbjct: 40 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 90
>BC012844-1|AAH12844.1| 253|Homo sapiens prion protein (p27-30)
(Creutzfeldt-Jakob disease, Gerstmann-Strausler-Scheinke
protein.
Length = 253
Score = 29.9 bits (64), Expect = 5.0
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
G+ G P+GGGGWGQ P G G PH G P G WG
Sbjct: 40 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 90
>AY569456-1|AAS80162.1| 253|Homo sapiens prion protein protein.
Length = 253
Score = 29.9 bits (64), Expect = 5.0
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
G+ G P+GGGGWGQ P G G PH G P G WG
Sbjct: 40 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 90
>AY458651-1|AAR21603.1| 277|Homo sapiens prion protein protein.
Length = 277
Score = 29.9 bits (64), Expect = 5.0
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
G+ G P+GGGGWGQ P G G PH G P G WG
Sbjct: 40 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 90
>AY219883-1|AAO83636.1| 246|Homo sapiens prion protein protein.
Length = 246
Score = 29.9 bits (64), Expect = 5.0
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
G+ G P+GGGGWGQ P G G PH G P G WG
Sbjct: 33 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 83
>AY008282-1|AAG21693.1| 253|Homo sapiens prion protein protein.
Length = 253
Score = 29.9 bits (64), Expect = 5.0
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
G+ G P+GGGGWGQ P G G PH G P G WG
Sbjct: 40 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 90
>AL133396-4|CAB75503.1| 253|Homo sapiens prion protein (p27-30)
(Creutzfeldt-Jakob disease, Gerstmann-Strausler-Scheinke
protein.
Length = 253
Score = 29.9 bits (64), Expect = 5.0
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
G+ G P+GGGGWGQ P G G PH G P G WG
Sbjct: 40 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 90
>AL133396-3|CAM27320.1| 249|Homo sapiens prion protein (p27-30)
(Creutzfeldt-Jakob disease, Gerstmann-Strausler-Scheinke
protein.
Length = 249
Score = 29.9 bits (64), Expect = 5.0
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
G+ G P+GGGGWGQ P G G PH G P G WG
Sbjct: 40 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 90
>AL133396-2|CAI19053.1| 217|Homo sapiens prion protein (p27-30)
(Creutzfeldt-Jakob disease, Gerstmann-Strausler-Scheinke
protein.
Length = 217
Score = 29.9 bits (64), Expect = 5.0
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
G+ G P+GGGGWGQ P G G PH G P G WG
Sbjct: 40 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 90
>AF085477-1|AAC62750.2| 285|Homo sapiens prion protein precursor
protein.
Length = 285
Score = 29.9 bits (64), Expect = 5.0
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
G+ G P+GGGGWGQ P G G PH G P G WG
Sbjct: 40 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 90
>AF076976-1|AAD46098.1| 253|Homo sapiens prion protein protein.
Length = 253
Score = 29.9 bits (64), Expect = 5.0
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
G+ G P+GGGGWGQ P G G PH G P G WG
Sbjct: 40 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 90
>AF030575-1|AAC05365.1| 246|Homo sapiens prion protein variant
protein.
Length = 246
Score = 29.9 bits (64), Expect = 5.0
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
G+ G P+GGGGWGQ P G G PH G P G WG
Sbjct: 33 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 83
>S83341-1|AAB50777.1| 81|Homo sapiens prion protein protein.
Length = 81
Score = 29.5 bits (63), Expect = 6.6
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +2
Query: 233 PKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
P+GGGGWGQ P G G PH G P G WG
Sbjct: 1 PQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 40
>S80539-1|AAB21334.1| 97|Homo sapiens PrP amyloid protein.
Length = 97
Score = 29.5 bits (63), Expect = 6.6
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +2
Query: 233 PKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
P+GGGGWGQ P G G PH G P G WG
Sbjct: 1 PQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 40
>S79978-1|AAB35416.1| 89|Homo sapiens prion protein protein.
Length = 89
Score = 29.5 bits (63), Expect = 6.6
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +2
Query: 233 PKGGGGWGQSPSWK*AAPTGCSRG-PHTG--DPPXG*XAWG 346
P+GGGGWGQ P G G PH G P G WG
Sbjct: 1 PQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWG 40
>X83416-1|CAA58442.1| 245|Homo sapiens prion protein protein.
Length = 245
Score = 29.1 bits (62), Expect = 8.8
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG 316
G+ G P+GGGGWGQ P G G PH G
Sbjct: 40 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGG 79
>U29185-1|AAC78725.1| 245|Homo sapiens prion protein protein.
Length = 245
Score = 29.1 bits (62), Expect = 8.8
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG 316
G+ G P+GGGGWGQ P G G PH G
Sbjct: 40 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGG 79
>U17986-1|AAA86990.1| 732|Homo sapiens GABA/noradrenaline
transporter protein.
Length = 732
Score = 29.1 bits (62), Expect = 8.8
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = -2
Query: 358 HQPLAPRLL-PXWRVPRMGTAAAPRRCSLFP*GAXXXXXXXLWDGVFLPATVLPP 197
H P APRLL P R PR G+ A R SL A W G LP L P
Sbjct: 167 HSPRAPRLLSPLRRAPR-GSPAPHRHASLQTNEAPRELPHCTWPG--LPGRSLAP 218
>M81929-1|AAB59442.1| 224|Homo sapiens prion protein protein.
Length = 224
Score = 29.1 bits (62), Expect = 8.8
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG 316
G+ G P+GGGGWGQ P G G PH G
Sbjct: 32 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGG 71
>AY219882-1|AAO83635.1| 238|Homo sapiens prion protein protein.
Length = 238
Score = 29.1 bits (62), Expect = 8.8
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +2
Query: 200 GEDCSG*EHPIPKGGGGWGQSPSWK*AAPTGCSRG-PHTG 316
G+ G P+GGGGWGQ P G G PH G
Sbjct: 33 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGG 72
>AL360169-1|CAI16559.1| 1543|Homo sapiens RP3-442A17.1 protein.
Length = 1543
Score = 29.1 bits (62), Expect = 8.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 254 PTPHPPLGWGVLTRYSPPPYQYCITMG 174
P HPPL +T PPPYQ+ +G
Sbjct: 1103 PLRHPPLPEAAVTLKRPPPYQWDPMLG 1129
>AL353800-1|CAI20993.1| 1543|Homo sapiens RP3-442A17.1 protein.
Length = 1543
Score = 29.1 bits (62), Expect = 8.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 254 PTPHPPLGWGVLTRYSPPPYQYCITMG 174
P HPPL +T PPPYQ+ +G
Sbjct: 1103 PLRHPPLPEAAVTLKRPPPYQWDPMLG 1129
>AF219946-1|AAF87975.1| 1544|Homo sapiens tubby super-family protein
protein.
Length = 1544
Score = 29.1 bits (62), Expect = 8.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 254 PTPHPPLGWGVLTRYSPPPYQYCITMG 174
P HPPL +T PPPYQ+ +G
Sbjct: 1104 PLRHPPLPEAAVTLKRPPPYQWDPMLG 1130
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,821,268
Number of Sequences: 237096
Number of extensions: 2091934
Number of successful extensions: 5157
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 4614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5128
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4423060356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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