Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11l10
(491 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68753-7|CAA92987.1| 240|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z54306-6|CAA91090.2| 321|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 28 4.2
AL031268-1|CAD59161.1| 321|Caenorhabditis elegans Hypothetical ... 28 4.2
U64856-2|AAB04986.2| 365|Caenorhabditis elegans Dpp/bmp-like pr... 27 5.6
AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso... 27 5.6
AF074395-1|AAC26791.1| 365|Caenorhabditis elegans CET-1 protein. 27 5.6
AF004395-1|AAC27729.1| 365|Caenorhabditis elegans decapentapleg... 27 5.6
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 27 7.4
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 27 7.4
Z80789-1|CAB02551.1| 708|Caenorhabditis elegans Hypothetical pr... 27 9.8
>Z68753-7|CAA92987.1| 240|Caenorhabditis elegans Hypothetical
protein ZC518.4 protein.
Length = 240
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 220 RTPHPKGGWGVGSKPLMEIGCTYGVQPRSPYGGPAKXV 333
R PHP GSKP + I CT G QP++ + +K V
Sbjct: 110 RWPHPSID-SDGSKPCVNISCT-GGQPKTLFSPSSKHV 145
>Z54306-6|CAA91090.2| 321|Caenorhabditis elegans Hypothetical
protein B0457.2 protein.
Length = 321
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 241 GWGVGSKPLMEIGCTYGVQPRSPYGGPAKXV-XGVGLE 351
G+GVG+ P +E+G +GV P G + V GVGL+
Sbjct: 231 GFGVGAVPGLEVGVGWGVDV-GPIPGMGESVGVGVGLD 267
>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
protein R10E11.1b protein.
Length = 2056
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -1
Query: 320 GPPYGDRGCTP*VQPISMRGFDPTPHPPLGWGVLTRYSPPPYQYCITMGRGG 165
GPP G +G +S G PTP P+G G + + P T GR G
Sbjct: 206 GPPPGAQGMPQGYPGVSRGG--PTPGQPMGRGAMMNGAMPRSGPMPTQGRPG 255
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
protein R10E11.1a protein.
Length = 2045
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -1
Query: 320 GPPYGDRGCTP*VQPISMRGFDPTPHPPLGWGVLTRYSPPPYQYCITMGRGG 165
GPP G +G +S G PTP P+G G + + P T GR G
Sbjct: 206 GPPPGAQGMPQGYPGVSRGG--PTPGQPMGRGAMMNGAMPRSGPMPTQGRPG 255
>AL031268-1|CAD59161.1| 321|Caenorhabditis elegans Hypothetical
protein B0457.2 protein.
Length = 321
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 241 GWGVGSKPLMEIGCTYGVQPRSPYGGPAKXV-XGVGLE 351
G+GVG+ P +E+G +GV P G + V GVGL+
Sbjct: 231 GFGVGAVPGLEVGVGWGVDV-GPIPGMGESVGVGVGLD 267
>U64856-2|AAB04986.2| 365|Caenorhabditis elegans Dpp/bmp-like
protein 1 protein.
Length = 365
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -3
Query: 246 PPPFGMGCSYPLQSSPLSILYND 178
PPP C P ++SPLSILY D
Sbjct: 326 PPP----CCVPTETSPLSILYMD 344
>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 2
protein.
Length = 1086
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 254 PTPHPPLGWGVLTRYSPPPYQ 192
P P PPL G T +PPP Q
Sbjct: 29 PPPAPPLAPGASTSQAPPPLQ 49
>AF074395-1|AAC26791.1| 365|Caenorhabditis elegans CET-1 protein.
Length = 365
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -3
Query: 246 PPPFGMGCSYPLQSSPLSILYND 178
PPP C P ++SPLSILY D
Sbjct: 326 PPP----CCVPTETSPLSILYMD 344
>AF004395-1|AAC27729.1| 365|Caenorhabditis elegans decapentaplegic
protein homolog protein.
Length = 365
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -3
Query: 246 PPPFGMGCSYPLQSSPLSILYND 178
PPP C P ++SPLSILY D
Sbjct: 326 PPP----CCVPTETSPLSILYMD 344
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 27.1 bits (57), Expect = 7.4
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = -1
Query: 320 GPPYGDRGCTP*VQPISMRGFDPTPHPPLG--WGVLTRYSPPPYQ 192
GPP G +G P Q G P P P G G + PPYQ
Sbjct: 672 GPPGGGQGPPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQ 716
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 27.1 bits (57), Expect = 7.4
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = -1
Query: 320 GPPYGDRGCTP*VQPISMRGFDPTPHPPLG--WGVLTRYSPPPYQ 192
GPP G +G P Q G P P P G G + PPYQ
Sbjct: 672 GPPGGGQGPPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQ 716
>Z80789-1|CAB02551.1| 708|Caenorhabditis elegans Hypothetical
protein F48C11.2 protein.
Length = 708
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 195 IGGRTVAGKNTPSQRGVGGGVKAPHGNRLHLRGAA 299
+G R G+ + RG GGG +AP+G + +G A
Sbjct: 672 VGMRAARGRLGGAVRGGGGGGEAPNGWKPWAKGGA 706
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,968,466
Number of Sequences: 27780
Number of extensions: 249696
Number of successful extensions: 619
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -