Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11l08
(929 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 35 0.095
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 35 0.095
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 35 0.095
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 35 0.095
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr... 35 0.095
L14433-2|AAA27978.1| 410|Caenorhabditis elegans Hypothetical pr... 33 0.22
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 33 0.29
Z81586-5|CAB04696.1| 484|Caenorhabditis elegans Hypothetical pr... 33 0.38
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr... 33 0.38
AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical ... 33 0.38
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ... 31 0.89
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu... 31 0.89
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c... 31 0.89
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 31 1.6
AL021474-3|CAD54163.1| 519|Caenorhabditis elegans Hypothetical ... 31 1.6
Z46787-9|CAA86747.1| 274|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z50176-1|CAA90538.2| 408|Caenorhabditis elegans Hypothetical pr... 29 3.6
U53337-2|AAA96184.1| 639|Caenorhabditis elegans Hypothetical pr... 29 3.6
U41532-4|AAK68320.1| 767|Caenorhabditis elegans Hypothetical pr... 29 3.6
U41532-3|AAK68319.1| 797|Caenorhabditis elegans Hypothetical pr... 29 3.6
AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical ... 29 3.6
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 29 4.7
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 29 4.7
X70830-1|CAA50178.1| 534|Caenorhabditis elegans Cytoplasmic int... 29 4.7
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 29 4.7
U49831-7|AAA93408.1| 558|Caenorhabditis elegans Intermediate fi... 29 4.7
U49831-6|AAA93407.1| 589|Caenorhabditis elegans Intermediate fi... 29 4.7
U41264-1|AAA82421.1| 929|Caenorhabditis elegans Hypothetical pr... 29 6.3
U40059-5|AAA81140.1| 191|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z80215-10|CAB02271.3| 175|Caenorhabditis elegans Hypothetical p... 28 8.3
AL032643-5|CAA21656.1| 622|Caenorhabditis elegans Hypothetical ... 28 8.3
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 34.7 bits (76), Expect = 0.095
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Frame = -2
Query: 694 LLEEVIPQVLCTGKYDPAIKQQEEKNKQLVTKLIATFTEH--TNALQAVVAQKTE--ELF 527
L +E+ Q K + K QEE+NK+L L A ++ N L+A + Q E E
Sbjct: 994 LQDEMRQQDENISKLNKERKNQEEQNKKLTEDLQAAEEQNLAANKLKAKLMQSLEDSEQT 1053
Query: 526 KKQEFIERIIAIKDKQIEAKDLQVTR-VMTDLNRMYTGFQETMQRKDEMMHKKDELLQVK 350
++E R K+K+ +L++ + + +LN+ + + ++RK+ +H L+ +
Sbjct: 1054 MEREKRNRADMDKNKRKAEGELKIAQETLEELNKSKSDAENALRRKETELHTLGMKLEDE 1113
Query: 349 DTQVSNL 329
V+ L
Sbjct: 1114 QAAVAKL 1120
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 34.7 bits (76), Expect = 0.095
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Frame = -2
Query: 694 LLEEVIPQVLCTGKYDPAIKQQEEKNKQLVTKLIATFTEH--TNALQAVVAQKTE--ELF 527
L +E+ Q K + K QEE+NK+L L A ++ N L+A + Q E E
Sbjct: 994 LQDEMRQQDENISKLNKERKNQEEQNKKLTEDLQAAEEQNLAANKLKAKLMQSLEDSEQT 1053
Query: 526 KKQEFIERIIAIKDKQIEAKDLQVTR-VMTDLNRMYTGFQETMQRKDEMMHKKDELLQVK 350
++E R K+K+ +L++ + + +LN+ + + ++RK+ +H L+ +
Sbjct: 1054 MEREKRNRADMDKNKRKAEGELKIAQETLEELNKSKSDAENALRRKETELHTLGMKLEDE 1113
Query: 349 DTQVSNL 329
V+ L
Sbjct: 1114 QAAVAKL 1120
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 34.7 bits (76), Expect = 0.095
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Frame = -2
Query: 694 LLEEVIPQVLCTGKYDPAIKQQEEKNKQLVTKLIATFTEH--TNALQAVVAQKTE--ELF 527
L +E+ Q K + K QEE+NK+L L A ++ N L+A + Q E E
Sbjct: 994 LQDEMRQQDENISKLNKERKNQEEQNKKLTEDLQAAEEQNLAANKLKAKLMQSLEDSEQT 1053
Query: 526 KKQEFIERIIAIKDKQIEAKDLQVTR-VMTDLNRMYTGFQETMQRKDEMMHKKDELLQVK 350
++E R K+K+ +L++ + + +LN+ + + ++RK+ +H L+ +
Sbjct: 1054 MEREKRNRADMDKNKRKAEGELKIAQETLEELNKSKSDAENALRRKETELHTLGMKLEDE 1113
Query: 349 DTQVSNL 329
V+ L
Sbjct: 1114 QAAVAKL 1120
>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
protein C18C4.5b protein.
Length = 1046
Score = 34.7 bits (76), Expect = 0.095
Identities = 26/121 (21%), Positives = 52/121 (42%)
Frame = -2
Query: 637 KQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAKDLQ 458
+Q EE+ + L T I T + Q + + K +E+IE+ + D
Sbjct: 478 RQYEEETRSLQTN-IRTLQDEVYQHQDAITEWKNRAEKAEEYIEKENHRVQNASSSHDAD 536
Query: 457 VTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSDRAVQYPAD 278
+TR+ + +M ++ Q KD+ + + E ++V +++ SDR +Q +
Sbjct: 537 ITRLENEKTQMEEALEKADQEKDQAIREASESVRVMKREMTEASI----TSDRQIQSLKE 592
Query: 277 K 275
K
Sbjct: 593 K 593
>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
protein C18C4.5a protein.
Length = 1022
Score = 34.7 bits (76), Expect = 0.095
Identities = 26/121 (21%), Positives = 52/121 (42%)
Frame = -2
Query: 637 KQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAKDLQ 458
+Q EE+ + L T I T + Q + + K +E+IE+ + D
Sbjct: 478 RQYEEETRSLQTN-IRTLQDEVYQHQDAITEWKNRAEKAEEYIEKENHRVQNASSSHDAD 536
Query: 457 VTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSDRAVQYPAD 278
+TR+ + +M ++ Q KD+ + + E ++V +++ SDR +Q +
Sbjct: 537 ITRLENEKTQMEEALEKADQEKDQAIREASESVRVMKREMTEASI----TSDRQIQSLKE 592
Query: 277 K 275
K
Sbjct: 593 K 593
>L14433-2|AAA27978.1| 410|Caenorhabditis elegans Hypothetical
protein C50C3.8 protein.
Length = 410
Score = 33.5 bits (73), Expect = 0.22
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Frame = -2
Query: 580 EHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETM 401
+H A + ++ Q + +FK +I + +I +D + V + MYTG E++
Sbjct: 228 KHIKAHRCILGQNSP-VFKSMFSSPNMIEAQKGEIHIEDAKYDSVRAMVEFMYTGATESL 286
Query: 400 QRK---DEMMHKKD--ELLQVKDTQVSNLIAKMIDLSD 302
+ + DE++ D E+L +KD Q LIA+ I+L +
Sbjct: 287 ESQGNIDEILAIADKYEVLMLKD-QCERLIAQTINLKN 323
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 33.1 bits (72), Expect = 0.29
Identities = 34/126 (26%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Frame = -2
Query: 640 IKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAKDL 461
++ + ++ ++L K +E L+A +AQ EEL ++Q E I DKQ +A+ +
Sbjct: 1703 LELENDELEELRAKGGGISSEEKRRLEAKIAQLEEELEEEQSNCELAI---DKQRKAQ-V 1758
Query: 460 QVTRVMTDLNRMYTGFQETMQRKDEMMHK----KDELLQVKDTQVSNLIAKMIDLSDRAV 293
Q+ ++ TDL+ T Q+T K + K ++ +++ S A+M L + V
Sbjct: 1759 QLEQITTDLSMERTLNQKTEAEKQSLERSNRDYKAKITELESGAQSRARAQMAAL-EAKV 1817
Query: 292 QYPADK 275
QY D+
Sbjct: 1818 QYLEDQ 1823
>Z81586-5|CAB04696.1| 484|Caenorhabditis elegans Hypothetical
protein T05F1.7 protein.
Length = 484
Score = 32.7 bits (71), Expect = 0.38
Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Frame = -2
Query: 691 LEEVIPQVLCTGKYDPAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEF 512
++E +PQ + D ++ EK ++++ K N + + K E+ KK +
Sbjct: 83 IQEKLPQR--QKQIDEILRALNEKRREVLQKQNEIAGFRVNRTENSMKSKMEKAKKKLDE 140
Query: 511 IERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDEL-LQVKDTQVS 335
+++ ++DK+I + R +++ + +QR+ E KK+E+ ++K +V
Sbjct: 141 MKKKKIVQDKKISRLRSDIARSEKSFDKVEKDIHKEIQRQMENETKKEEIERRIKIFEVE 200
Query: 334 N 332
N
Sbjct: 201 N 201
>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
protein W02B8.2 protein.
Length = 1256
Score = 32.7 bits (71), Expect = 0.38
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 2/208 (0%)
Frame = -2
Query: 625 EKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRV 446
EKN Q TKL +E+ N + V + E + K Q +E +D++ K L+ +
Sbjct: 180 EKNSQFQTKLAEISSENRNLERKVQKFREELIVKDQRSLE---VHQDQENTQKVLKEVKQ 236
Query: 445 MTD-LNRMYTGFQETMQRKD-EMMHKKDELLQVKDTQVSNLIAKMIDLSDRAVQYPADKR 272
++D L+ + T +RKD + ++D+ LQ + +++ + L + ++ +
Sbjct: 237 LSDRLDYL------TPKRKDVSRIKERDDFLQFSAKIIEETMSE-LKLKNARLERELSE- 288
Query: 271 KHPVLCVTRDGTTFTAITGQKTYVESQKHKRNIDAANIVVENIRPNPTVDWNNATDRLQS 92
K ++ VT++ T + +S++ + + A N+ + + + D A L+
Sbjct: 289 KEELVKVTKEELQELQKTVTQAMGDSEQATKYLHAENMKLTRQKADIRCDLLEARRNLKG 348
Query: 91 KRSKRSISFDSLEEAQQFENRIKYLLKN 8
KR +EA + RI L KN
Sbjct: 349 FDEKREELEKQRDEALEDVRRITELKKN 376
>AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical
protein C09E7.5 protein.
Length = 496
Score = 32.7 bits (71), Expect = 0.38
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = -2
Query: 538 EELFKKQEFIERIIAIK-DKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDE- 365
E L K+ IE DK+ + T T +N M + +ET++ + E K+DE
Sbjct: 71 ENLDNKENIIESTFKTAIDKEDTKSCSECTEFKTYMNNMKSVLEETLEEEKEKNKKRDEA 130
Query: 364 ---LLQVKDTQVSNLIAKMIDLSDRAVQYPADKRK 269
L K+ ++ +L ++I LS+ + K K
Sbjct: 131 SKKTLNSKNEEIEHLKKRVISLSNSQSENETMKSK 165
>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
protein Y11D7A.14 protein.
Length = 1464
Score = 31.5 bits (68), Expect = 0.89
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Frame = -2
Query: 637 KQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELF-----KKQEFIERIIAIKD--KQ 479
K+ EE KQ KL+ E ++ + ++ EE+F K E ++++ + D ++
Sbjct: 877 KELEEVEKQGREKLLEKEREFRKTMEEM--EQNEEIFNVLERKYNEQHKKVMKMNDVLRE 934
Query: 478 IEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSD 302
E K Q+ TDL +ET R+D ++ + K + + L ++ LSD
Sbjct: 935 YERKIEQLNMEKTDLENENQKLRETQNRQDSHYSNLEKEVMEKSSLIDELQNQIQKLSD 993
>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
(myotubularin) family protein 5 protein.
Length = 1744
Score = 31.5 bits (68), Expect = 0.89
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 5/138 (3%)
Frame = -2
Query: 625 EKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRV 446
E N+ + K+ F EH + + + L + F + K K++ + R
Sbjct: 1042 ETNESELAKVAKGFVEHRLPVVVWMNENGALLVRASAFTSIDMVKKLKKV----VNYRRN 1097
Query: 445 MTDLNRMYTGFQETMQRKDEMMHKKDELL----QVKDTQVS-NLIAKMIDLSDRAVQYPA 281
+ L TG Q+T+ K + + ++K +V N IAK+ + S RAV Y
Sbjct: 1098 ASKLTGSMTGSQQTLHSKASSNEESSSNIVAGAEIKSAEVQMNYIAKLSNSSQRAVSYAL 1157
Query: 280 DKRKHPVLCVTRDGTTFT 227
+ DG T T
Sbjct: 1158 PTQYADKFSTFNDGCTLT 1175
>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 1 protein.
Length = 1475
Score = 31.5 bits (68), Expect = 0.89
Identities = 36/201 (17%), Positives = 88/201 (43%), Gaps = 2/201 (0%)
Frame = -2
Query: 643 AIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAKD 464
A Q++ ++ LVT L E A+++ A+ ++ Q+F +++ ++ + E K
Sbjct: 990 AAVQEKGRSSDLVTSLEGKIQELETAIESSTAENVQKSKTIQDFTDKVSLLESQICELKS 1049
Query: 463 LQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSDRAVQYP 284
Q ++ D N + + ++ EL+++ T + I K+ +++ +
Sbjct: 1050 -QNEQMEIDTN---LNMDQLSEMSSQLESANAELIELTRTS-AETIDKLRGEVEKSTKAM 1104
Query: 283 ADKRKHPVLCVTRDGTTFTAITGQKTYVESQKHKRNIDAANIVVENIRPN-PTVDWNNA- 110
D+ +H V + + Q + KHK + V++ +R + T++ + A
Sbjct: 1105 MDQEEHLAELVAKIESRDVENADQ-----AAKHKEEQERLQSVIDTLRTSQSTIEESQAK 1159
Query: 109 TDRLQSKRSKRSISFDSLEEA 47
++ L S+ + S + ++A
Sbjct: 1160 SEELNSRIKELQASIEFAQKA 1180
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = -2
Query: 637 KQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKD 485
+ QEE ++ ++K+ + N +AV +K ELFK+ ++R+ +KD
Sbjct: 363 EHQEEPDEDTMSKVKVLYIR--NIKEAVTEEKLNELFKEYASLDRVKKVKD 411
>AL021474-3|CAD54163.1| 519|Caenorhabditis elegans Hypothetical
protein Y32F6A.4 protein.
Length = 519
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 456 TCKSLASICLSLIAMMRSINSCFLKSSSVFCATTACSAFVCSVNVAISLVTNCL 617
TC+ L SIC+ + M S+ L S ++ A S S + I +V CL
Sbjct: 139 TCQLLVSICIDVTQFMISVVYLLLASKNIMNMIIAFSGTHISFCILILIVATCL 192
>Z46787-9|CAA86747.1| 274|Caenorhabditis elegans Hypothetical
protein C16C10.9 protein.
Length = 274
Score = 30.3 bits (65), Expect = 2.1
Identities = 23/97 (23%), Positives = 46/97 (47%)
Frame = -2
Query: 631 QEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVT 452
Q+EK++Q+ ++ E N V+A + + +AI+ + +E + +
Sbjct: 16 QKEKDRQITREVNNLIIEQENTQNRVIAPSPQLM----------VAIR-QSVEQRQEYIR 64
Query: 451 RVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQ 341
R+ D+ RM + E + +MM K+E++Q D Q
Sbjct: 65 RMSIDIQRMLIPYGEDVYLISDMMLLKEEVVQHIDFQ 101
>Z50176-1|CAA90538.2| 408|Caenorhabditis elegans Hypothetical
protein C09G1.1 protein.
Length = 408
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 365 LVFFVHHFIFSLHSFLK 415
L FFVHH +F+L S+LK
Sbjct: 20 LFFFVHHLLFNLFSYLK 36
>U53337-2|AAA96184.1| 639|Caenorhabditis elegans Hypothetical
protein R02E12.4 protein.
Length = 639
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/91 (23%), Positives = 42/91 (46%)
Frame = -2
Query: 508 ERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNL 329
E +A++ K+++ D RV +L++ +TM++ E+ + + L+V + NL
Sbjct: 328 ESCLAVRRKKVQVGDHTSDRVDMELHKEKELMTDTMKQMKEIGERVERQLEVNQSARKNL 387
Query: 328 IAKMIDLSDRAVQYPADKRKHPVLCVTRDGT 236
L D ++ A H + + DGT
Sbjct: 388 ------LRDLTLKQEAISLDHKSVAIGADGT 412
>U41532-4|AAK68320.1| 767|Caenorhabditis elegans Hypothetical
protein F11D5.3b protein.
Length = 767
Score = 29.5 bits (63), Expect = 3.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 879 PRVCXQRLYNFHILNCW 929
PR+C +LYN IL CW
Sbjct: 722 PRMCPSKLYNEQILPCW 738
>U41532-3|AAK68319.1| 797|Caenorhabditis elegans Hypothetical
protein F11D5.3a protein.
Length = 797
Score = 29.5 bits (63), Expect = 3.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 879 PRVCXQRLYNFHILNCW 929
PR+C +LYN IL CW
Sbjct: 752 PRMCPSKLYNEQILPCW 768
>AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical
protein Y102A11A.9 protein.
Length = 332
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/58 (22%), Positives = 27/58 (46%)
Frame = -2
Query: 601 KLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNR 428
K +A++ L + + + K++ F+ERI+ + E D + R +T + R
Sbjct: 41 KKVASYETDLKKLSTEMQRLRRDAEKRETFLERIVTAQYHPTELNDTNLARTLTSIKR 98
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/117 (18%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Frame = -2
Query: 652 YDPAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKT--EELFKKQEFIERIIAIKDKQ 479
+D + + K + ++ AT + N V ++ + L ++ E + R I ++
Sbjct: 1456 FDKIVDDWKRKVDDIQKEIDATTRDSRNTSTEVFKLRSSMDNLSEQIETLRRENKIFSQE 1515
Query: 478 IEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDL 308
I + Q+T+ ++ + Q KDE+ H DE + + S ++ I++
Sbjct: 1516 IRDINEQITQGGRTYQEVHKSVRRLEQEKDELQHALDEAEAALEAEESKVLRLQIEV 1572
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical protein
R06C7.10 protein.
Length = 1938
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/117 (18%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Frame = -2
Query: 652 YDPAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKT--EELFKKQEFIERIIAIKDKQ 479
+D + + K + ++ AT + N V ++ + L ++ E + R I ++
Sbjct: 1456 FDKIVDDWKRKVDDIQKEIDATTRDSRNTSTEVFKLRSSMDNLSEQIETLRRENKIFSQE 1515
Query: 478 IEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDL 308
I + Q+T+ ++ + Q KDE+ H DE + + S ++ I++
Sbjct: 1516 IRDINEQITQGGRTYQEVHKSVRRLEQEKDELQHALDEAEAALEAEESKVLRLQIEV 1572
>X70830-1|CAA50178.1| 534|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 534
Score = 29.1 bits (62), Expect = 4.7
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 3/133 (2%)
Frame = -2
Query: 658 GKYDPAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQ 479
G Y +K+ EE+N++LV L + + + +E L ++ I+ K +
Sbjct: 62 GNYIDRVKKLEEQNRKLVADLDELRGKWGKDTSEIKIKYSESLSTARKDIDDAARRKAE- 120
Query: 478 IEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQ-VKDTQ--VSNLIAKMIDL 308
D++V R DL + +++ QR++ K + + D Q V L A+ L
Sbjct: 121 ---VDVKVARHRDDLAEYRSRYEDIQQRRESDREKISQWTNAIADAQSEVEMLRARFKQL 177
Query: 307 SDRAVQYPADKRK 269
+D + AD +
Sbjct: 178 TDEEKRVTADNSR 190
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/117 (18%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Frame = -2
Query: 652 YDPAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKT--EELFKKQEFIERIIAIKDKQ 479
+D + + K + ++ AT + N V ++ + L ++ E + R I ++
Sbjct: 1456 FDKIVDDWKRKVDDIQKEIDATTRDSRNTSTEVFKLRSSMDNLSEQIETLRRENKIFSQE 1515
Query: 478 IEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDL 308
I + Q+T+ ++ + Q KDE+ H DE + + S ++ I++
Sbjct: 1516 IRDINEQITQGGRTYQEVHKSVRRLEQEKDELQHALDEAEAALEAEESKVLRLQIEV 1572
>U49831-7|AAA93408.1| 558|Caenorhabditis elegans Intermediate
filament, b protein1, isoform a protein.
Length = 558
Score = 29.1 bits (62), Expect = 4.7
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 3/133 (2%)
Frame = -2
Query: 658 GKYDPAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQ 479
G Y +K+ EE+N++LV L + + + +E L ++ I+ K +
Sbjct: 62 GNYIDRVKKLEEQNRKLVADLDELRGKWGKDTSEIKIKYSESLSTARKDIDDAARRKAE- 120
Query: 478 IEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQ-VKDTQ--VSNLIAKMIDL 308
D++V R DL + +++ QR++ K + + D Q V L A+ L
Sbjct: 121 ---VDVKVARHRDDLAEYRSRYEDIQQRRESDREKISQWTNAIADAQSEVEMLRARFKQL 177
Query: 307 SDRAVQYPADKRK 269
+D + AD +
Sbjct: 178 TDEEKRVTADNSR 190
>U49831-6|AAA93407.1| 589|Caenorhabditis elegans Intermediate
filament, b protein1, isoform b protein.
Length = 589
Score = 29.1 bits (62), Expect = 4.7
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 3/133 (2%)
Frame = -2
Query: 658 GKYDPAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQ 479
G Y +K+ EE+N++LV L + + + +E L ++ I+ K +
Sbjct: 93 GNYIDRVKKLEEQNRKLVADLDELRGKWGKDTSEIKIKYSESLSTARKDIDDAARRKAE- 151
Query: 478 IEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQ-VKDTQ--VSNLIAKMIDL 308
D++V R DL + +++ QR++ K + + D Q V L A+ L
Sbjct: 152 ---VDVKVARHRDDLAEYRSRYEDIQQRRESDREKISQWTNAIADAQSEVEMLRARFKQL 208
Query: 307 SDRAVQYPADKRK 269
+D + AD +
Sbjct: 209 TDEEKRVTADNSR 221
>U41264-1|AAA82421.1| 929|Caenorhabditis elegans Hypothetical
protein F10E7.8 protein.
Length = 929
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 226 AITGQKTYVESQKHKRNIDAANIVVENIRPNPTVDWNNATD 104
AI Q Y+ Q K N+D + + +R T DW A+D
Sbjct: 779 AIKMQSRYLGRQWRKSNMDIISAIYSRVRHRMTDDWAFASD 819
>U40059-5|AAA81140.1| 191|Caenorhabditis elegans Hypothetical
protein K03C7.3 protein.
Length = 191
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 528 KSSSVFCATTACSAFVCSVNVAISLVTNCLFFSSCCLIAGSYLPVHST 671
K +S C T S F C+ + L FS+CC I G + HST
Sbjct: 19 KDASFECVTLLKSVF-CARKKKKRFFLSFLSFSTCCSILGWFFLSHST 65
>Z80215-10|CAB02271.3| 175|Caenorhabditis elegans Hypothetical
protein C36B1.6 protein.
Length = 175
Score = 28.3 bits (60), Expect = 8.3
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Frame = +3
Query: 453 VTCKSLASICLSLIAMMR---SINSCFLKSSSVFCATTAC------SAFV-CSVNVAISL 602
+ C S+ S+ L++ M+ +I C L S+ F C ++F+ C+ +
Sbjct: 77 IDCCSIFSVLLNIARMVMFGGTILGCVLVIST-FSRNNECDQLLYWTSFIFCAFFIIFYS 135
Query: 603 VTNCLFFSSCCLI-AGSYLPV 662
+T C+F CC I G+Y V
Sbjct: 136 ITTCIFICCCCCIFTGAYRSV 156
>AL032643-5|CAA21656.1| 622|Caenorhabditis elegans Hypothetical
protein Y54E5A.7 protein.
Length = 622
Score = 28.3 bits (60), Expect = 8.3
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Frame = -2
Query: 550 AQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQ-RK-DEMMH 377
A+ TEEL+ K IER +D + E + + T +M+ +++ Q RK + ++
Sbjct: 399 AKATEELYLKDAKIERFYIDQDTEEEMLHIDGVSMPT---KMFVELEKSGQYRKLNYILK 455
Query: 376 KKDELLQVKDTQVSNL---IAKMIDLSDRAVQYPADKRKHPV 260
E+++V N+ K+++++ V P KHP+
Sbjct: 456 MGREIMKVAGEMRGNIAPEARKVVEIATSMVSSPERPAKHPL 497
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,688,481
Number of Sequences: 27780
Number of extensions: 447314
Number of successful extensions: 1671
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1671
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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