Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11l06
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    28   1.3  
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc...    27   4.0  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.3  

>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 390 TSHTCIHILSHLINSERTM*SRQNTRVNNLMFFV 289
           TSH C H+ SHL    +   S++  R+  LM F+
Sbjct: 623 TSHKCNHLHSHLDKPPKV--SKEEDRIKKLMMFL 654


>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
           Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 57  NPKDLGSFVANLHFLSLGSPGSNMA*TCSL*QARFQKWKARILIPVSAH 203
           N K L SF    +++ +G P   +  TC L  +  +K K  IL P S++
Sbjct: 204 NDKQLHSFDLEGYWMDVGQPKDYLTGTC-LYLSSLRKHKPEILAPASSN 251


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 174 LSISETAPA-TRSMFRPCLILVSQEIKNED*LQTNLNPWDFLHSYLLWKCVVIYIPV 7
           L +S+  PA ++++    L+   Q +   D     LNP ++ HSY  W  +VI + V
Sbjct: 60  LPLSQGRPAKSKNILNDTLLAEDQYLVTWDGPDDPLNPRNWSHSYKWW--IVIQVSV 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,582
Number of Sequences: 5004
Number of extensions: 41232
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)