Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11l06
(785 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC004393-1|AAH04393.1| 221|Homo sapiens alkB, alkylation repair... 82 2e-15
AY427650-1|AAR24624.1| 221|Homo sapiens spermatogenesis cell pr... 82 2e-15
AY358858-1|AAQ89217.1| 221|Homo sapiens AGTG6002 protein. 82 2e-15
AK223336-1|BAD97056.1| 221|Homo sapiens spermatogenesis associa... 79 1e-14
X53002-1|CAA37188.1| 799|Homo sapiens protein ( Human mRNA for ... 31 6.2
M35011-1|AAA52707.1| 796|Homo sapiens ITGB5 protein. 31 6.2
J05633-1|AAA59183.1| 799|Homo sapiens ITGB5 protein. 31 6.2
BC006541-1|AAH06541.1| 799|Homo sapiens integrin, beta 5 protein. 31 6.2
>BC004393-1|AAH04393.1| 221|Homo sapiens alkB, alkylation repair
homolog 7 (E. coli) protein.
Length = 221
Score = 82.2 bits (194), Expect = 2e-15
Identities = 43/101 (42%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Frame = -2
Query: 775 NQVILDRVKALAFTTDT--LPHVHVLDLAAAGFIKPHIDAVRFCGDVIAGVCLCSSAVMR 602
++ IL RV+A AF L VHVLDL A G+IKPH+D+++FCG IAG+ L S +VMR
Sbjct: 85 SRAILQRVQAAAFGPGQTLLSSVHVLDLEARGYIKPHVDSIKFCGATIAGLSLLSPSVMR 144
Query: 601 XXXXXXXXXXXXXXXXXXXLYVMKGVARYEFTHAVLGGERS 479
LY+++G ARY+F+H +L E S
Sbjct: 145 LVHTQEPGEWLELLLEPGSLYILRGSARYDFSHEILRDEES 185
>AY427650-1|AAR24624.1| 221|Homo sapiens spermatogenesis cell
proliferation related protein protein.
Length = 221
Score = 82.2 bits (194), Expect = 2e-15
Identities = 43/101 (42%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Frame = -2
Query: 775 NQVILDRVKALAFTTDT--LPHVHVLDLAAAGFIKPHIDAVRFCGDVIAGVCLCSSAVMR 602
++ IL RV+A AF L VHVLDL A G+IKPH+D+++FCG IAG+ L S +VMR
Sbjct: 85 SRAILQRVQAAAFGPGQTLLSSVHVLDLEARGYIKPHVDSIKFCGATIAGLSLLSPSVMR 144
Query: 601 XXXXXXXXXXXXXXXXXXXLYVMKGVARYEFTHAVLGGERS 479
LY+++G ARY+F+H +L E S
Sbjct: 145 LVHTQEPGEWLELLLEPGSLYILRGSARYDFSHEILRDEES 185
>AY358858-1|AAQ89217.1| 221|Homo sapiens AGTG6002 protein.
Length = 221
Score = 82.2 bits (194), Expect = 2e-15
Identities = 43/101 (42%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Frame = -2
Query: 775 NQVILDRVKALAFTTDT--LPHVHVLDLAAAGFIKPHIDAVRFCGDVIAGVCLCSSAVMR 602
++ IL RV+A AF L VHVLDL A G+IKPH+D+++FCG IAG+ L S +VMR
Sbjct: 85 SRAILQRVQAAAFGPGQTLLSSVHVLDLEARGYIKPHVDSIKFCGATIAGLSLLSPSVMR 144
Query: 601 XXXXXXXXXXXXXXXXXXXLYVMKGVARYEFTHAVLGGERS 479
LY+++G ARY+F+H +L E S
Sbjct: 145 LVHTQEPGEWLELLLEPGSLYILRGSARYDFSHEILRDEES 185
>AK223336-1|BAD97056.1| 221|Homo sapiens spermatogenesis associated
11 variant protein.
Length = 221
Score = 79.4 bits (187), Expect = 1e-14
Identities = 42/101 (41%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Frame = -2
Query: 775 NQVILDRVKALAFTTDT--LPHVHVLDLAAAGFIKPHIDAVRFCGDVIAGVCLCSSAVMR 602
++ I RV+A AF L VHVLDL A G+IKPH+D+++FCG IAG+ L S +VMR
Sbjct: 85 SRAIPQRVQAAAFGPGQTLLSSVHVLDLEARGYIKPHVDSIKFCGATIAGLSLLSPSVMR 144
Query: 601 XXXXXXXXXXXXXXXXXXXLYVMKGVARYEFTHAVLGGERS 479
LY+++G ARY+F+H +L E S
Sbjct: 145 LVHTQEPGEWLELLLEPGSLYILRGSARYDFSHEILRDEES 185
>X53002-1|CAA37188.1| 799|Homo sapiens protein ( Human mRNA for
integrin beta-5 subunit. ).
Length = 799
Score = 30.7 bits (66), Expect = 6.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 760 DRVKALAFTTDTLPHVHVLDLAAAGFIKPH 671
D + L FTTD +PH+ LD G ++PH
Sbjct: 268 DALHLLVFTTDDVPHI-ALDGKLGGLVQPH 296
>M35011-1|AAA52707.1| 796|Homo sapiens ITGB5 protein.
Length = 796
Score = 30.7 bits (66), Expect = 6.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 760 DRVKALAFTTDTLPHVHVLDLAAAGFIKPH 671
D + L FTTD +PH+ LD G ++PH
Sbjct: 268 DALHLLVFTTDDVPHI-ALDGKLGGLVQPH 296
>J05633-1|AAA59183.1| 799|Homo sapiens ITGB5 protein.
Length = 799
Score = 30.7 bits (66), Expect = 6.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 760 DRVKALAFTTDTLPHVHVLDLAAAGFIKPH 671
D + L FTTD +PH+ LD G ++PH
Sbjct: 268 DALHLLVFTTDDVPHI-ALDGKLGGLVQPH 296
>BC006541-1|AAH06541.1| 799|Homo sapiens integrin, beta 5 protein.
Length = 799
Score = 30.7 bits (66), Expect = 6.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 760 DRVKALAFTTDTLPHVHVLDLAAAGFIKPH 671
D + L FTTD +PH+ LD G ++PH
Sbjct: 268 DALHLLVFTTDDVPHI-ALDGKLGGLVQPH 296
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,701,168
Number of Sequences: 237096
Number of extensions: 1530512
Number of successful extensions: 2145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2141
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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