Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11l06
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-12|CAE18012.1|  227|Caenorhabditis elegans Hypothetical...    85   5e-17
Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z99710-9|CAN99658.1|  402|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>AL110485-12|CAE18012.1|  227|Caenorhabditis elegans Hypothetical
           protein Y46G5A.35 protein.
          Length = 227

 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 45/107 (42%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
 Frame = -2

Query: 784 KPENQVILDRVKALAF--TTDTLPHVHVLDLAAAGFIKPHIDAVRFCGDVIAGVCLCSSA 611
           + EN  ++ R+++ +F   T+ L +VH+LDL   G IKPHIDA+R+CGDVI GV L S A
Sbjct: 81  RDENLEVISRIRSESFGANTEHLTYVHILDLHKDGVIKPHIDAIRYCGDVITGVSLLSDA 140

Query: 610 VMR-XXXXXXXXXXXXXXXXXXXLYVMKGVARYEFTHAVLGGERSQW 473
           +MR                    LY + G  RY+FTH VLG + S W
Sbjct: 141 IMRLRHKDQKDELIMDLLMPRRSLYRLGGPGRYDFTHEVLGEQESVW 187


>Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical
           protein K08F8.2 protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 606 MTALEHRHTPAITSPQNRTASICGFMNPAAARSKTCTCGSVS 731
           ++AL  +  P+ T PQ+RT  I G  +P         C SVS
Sbjct: 267 LSALLSQRRPSPTVPQSRTEHISGLNSPPRHTGNKSDCESVS 308


>Z99710-9|CAN99658.1|  402|Caenorhabditis elegans Hypothetical
           protein F08A8.5b protein.
          Length = 402

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 3   NILVYK*QHISITDNCAENPKDLGSFVANLHFLSLGSPGS 122
           +IL Y  ++ +++  C  N  +L SF+ N HFL L    S
Sbjct: 33  HILEYFQKNSNLSPKCEINVNNLLSFIENRHFLDLEQKNS 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,012,406
Number of Sequences: 27780
Number of extensions: 233057
Number of successful extensions: 454
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)